Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32279
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   5e-04
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.009
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.035
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.060
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   1.7  
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)                   28   4.0  
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   5.3  
SB_33647| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.2  
SB_58532| Best HMM Match : Vicilin_N (HMM E-Value=0.88)                27   9.2  
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = -3

Query: 229 DVVAVSQAPSPESNPDSPLPVTTM 158
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = -3

Query: 220 AVSQAPSPESNPDSPLPVTTM 158
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = +3

Query: 303 TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXXYTKIVAGKKLVVAFVRRAVGAP 479
           T  +   R    ++++ R +WRASL            Y K+VA KKLVV F    VG P
Sbjct: 44  TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -1

Query: 219 PFLRLPLRNRTLIPRYP 169
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 34.3 bits (75), Expect = 0.060
 Identities = 19/42 (45%), Positives = 21/42 (50%)
 Frame = +3

Query: 354 RNNWRASLXXXXXXXXXXXXYTKIVAGKKLVVAFVRRAVGAP 479
           R +WRASL            Y K+VA KKLVV F    VG P
Sbjct: 14  RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 452 CNYELFTRNNFSIRYWSWNYRGCWH 378
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/38 (44%), Positives = 18/38 (47%)
 Frame = +3

Query: 366 RASLXXXXXXXXXXXXYTKIVAGKKLVVAFVRRAVGAP 479
           RASL            Y K+VA KKLVV F    VG P
Sbjct: 5   RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42


>SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)
          Length = 1003

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = -3

Query: 238  PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLKDASPVLDHAICKSYPDS 59
            PSL+  +  Q+ + ES P+ P P  +  V    +ES     + + S  + +   +S  + 
Sbjct: 841  PSLEPSSRVQSRAAESRPEQPSPEPSRRVQSGAVESRGWHSISEPSGRVQYRATESKAEQ 900

Query: 58   SKLTTSDARPSR 23
            S L  S    SR
Sbjct: 901  SSLEPSSGVQSR 912


>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 515 ICSANVSVSPRMRCTDSAAHKCNYELFTRNNFSIRYW-SWNY 393
           I S     S R+RCT S + KC     + + F    W S+NY
Sbjct: 139 ISSGYYGRSYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 238 PSLDVVAVSQAPSPESNPDSPLP 170
           P+ DV+A  Q P P S  D PLP
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLP 97


>SB_33647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 181 NQGSIPEREPEKRLPHPRKAAGAQIT-HSRHG-EVVTKNNDTGLLRGLVIGMSTL 339
           N+ +IP+RE E R      AAGA I  H +H      K+   G  R L +G   L
Sbjct: 10  NEKTIPQREVE-RTKKAATAAGASIAEHIKHAIAEQVKHAKPGFSRSLTLGQKLL 63


>SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 178 GNQGSIPEREPEKRLPHPRKAA 243
           GN+GS  + E EK LP P K A
Sbjct: 52  GNEGSEGDGEKEKMLPSPEKKA 73


>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 360 CSSLKYLKCTHSDYEAS*ESRIVIFRHYL-PVPGVGNLRA 244
           CS L YL+C          +R+++F H L     +G  RA
Sbjct: 528 CSILSYLRCNKPPVTIRWRTRLIVFTHLLVSYRSIGGQRA 567


>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = +3

Query: 354 RNNWRASLXXXXXXXXXXXXYTKIVAGKKLVVAFVRRAVGAP 479
           R    ASL            Y K+VA KKLVV F    VG P
Sbjct: 24  RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65


>SB_58532| Best HMM Match : Vicilin_N (HMM E-Value=0.88)
          Length = 234

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 166 SRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVTKNNDT 300
           +RVT NQ S      ++     RK   AQ+T  +    VT+N ++
Sbjct: 177 ARVTRNQESARVTRKQESARVTRKQVSAQVTRKQESARVTRNQES 221


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 65   WITFADRMVKYRRRIFQM 118
            W TF DR +KY R +F++
Sbjct: 1014 WFTFKDRQLKYYRGVFKV 1031


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,826,769
Number of Sequences: 59808
Number of extensions: 362290
Number of successful extensions: 972
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)