Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32278
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    29   0.23 
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    29   0.30 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   3.7  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   3.7  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    25   6.4  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 412 VSRDIRTTTEARRPGTARNTRRPKPTELSV 323
           V+R +RT+T  RRP T    R+PK    SV
Sbjct: 21  VARKVRTSTTFRRPKTLELARKPKYARKSV 50


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.1 bits (62), Expect = 0.30
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 412 VSRDIRTTTEARRPGTARNTRRPKPTELSV 323
           V++ +RT+T  RRP T + +R+PK    SV
Sbjct: 21  VAKKVRTSTTFRRPKTLQLSRKPKYARKSV 50


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 398 QDHHRGPAPRHSEKHSASEADRAERLLPGALRD 300
           ++HH+GP  +H+E+   +     E L+  A  D
Sbjct: 416 KEHHQGPKEKHNERPEQNMQSSHELLVIEAFAD 448


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 324 FAAGSAQRRPVTANNFNDHFYSEGKLRQKYKTSNLNTI 211
           F+ G +     T +N ND F  E    +K K+SN N +
Sbjct: 171 FSRGLSMTATSTTDNLNDEFDPEKWDTKKVKSSNRNFV 208


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 372 QAQRETLGVRSRQS*AFAAGSAQRRPVTANNFNDHFYSE 256
           Q    T+GV S Q     + S QR+  T N+ ND F  E
Sbjct: 263 QFSPHTMGVGSSQQANERSLSLQRKLETLNDSNDSFVKE 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,424,742
Number of Sequences: 5004
Number of extensions: 25052
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)