Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32278
         (424 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-93...    29   2.0  
04_03_0489 + 16503325-16503747,16503916-16503978                       28   3.6  
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002     27   4.7  
03_05_0057 + 20350971-20351405                                         27   4.7  
09_02_0425 + 9167684-9167803,9168034-9168108,9168200-9168653,916...    27   6.2  
05_07_0128 + 27879969-27880143,27880232-27881323,27883562-278836...    27   6.2  

>02_01_0129 -
           934865-935152,935241-935490,935965-936105,937175-937707
          Length = 403

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 323 NAQLC-RLRTPSVSRCAWAPGLCGGPDVP 406
           NA  C R   P V+  +WAP  CGG  VP
Sbjct: 75  NAWNCPRNSRPPVAALSWAPARCGGGAVP 103


>04_03_0489 + 16503325-16503747,16503916-16503978
          Length = 161

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2

Query: 314 PAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSA 421
           PAA A L RLRTP+ + C    G    P V  H  A
Sbjct: 49  PAAAACLRRLRTPATAACLRRAGNPRPPPVSPHKGA 84


>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
          Length = 877

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 398 QDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSPQIILTTI 267
           +DHHR   PR +   SASEA   ERL   A+ + P   I++  +
Sbjct: 714 EDHHRSKRPRTTTTSSASEA-YLERLY-DAVSENPHRVILIEDV 755


>03_05_0057 + 20350971-20351405
          Length = 144

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 304 LSAPGSKRSALSASDAECFSLCLGAGP 384
           LS+P + R AL   D EC S    AGP
Sbjct: 74  LSSPKAAREALKVHDPECCSRSPSAGP 100


>09_02_0425 +
           9167684-9167803,9168034-9168108,9168200-9168653,
           9168735-9168784
          Length = 232

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 314 PAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSA 421
           P    Q  R   P++ RC+W P L      PA  S+
Sbjct: 82  PTRRGQQQRRHAPALRRCSWEPLLALAAAAPARDSS 117


>05_07_0128 +
           27879969-27880143,27880232-27881323,27883562-27883698,
           27884179-27884409,27884707-27884730
          Length = 552

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 401 HQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSPQIILTT 270
           H  HH   +P H +  SA++A  A  +LP     A +P  ++ T
Sbjct: 371 HHHHHHLASPVH-DAVSAADASTAAMILPFTTTAAATPSNVVAT 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,148,870
Number of Sequences: 37544
Number of extensions: 161263
Number of successful extensions: 497
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)