Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32278
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   4.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   10.0 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   10.0 

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 10/40 (25%), Positives = 15/40 (37%)
 Frame = -1

Query: 403 DIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRK 284
           D+   T        +  ++P PTE   C     E   +RK
Sbjct: 16  DLDNVTMPETTPRRKKNKKPLPTECVFCRNNGEEEAYYRK 55


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -3

Query: 404 GHQDHHRGPAPRHSEKHSAS 345
           GH   H    P H   H+A+
Sbjct: 420 GHGHSHIHATPHHHHSHAAT 439


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 384 RPGAQAQRETLGVRSRQS*AFAAGSAQRRPVTANNFNDHFYSE 256
           +P  Q Q++    + +Q         QR P+T ++FN +   E
Sbjct: 829 QPQQQQQQQQQQPQQQQQQQQQQQQQQRGPMTNDDFNPNIEEE 871


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,653
Number of Sequences: 438
Number of extensions: 2136
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)