Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32277
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   1.7  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    27   2.2  
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    27   2.2  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    26   3.8  
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    25   5.1  
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    25   5.1  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   6.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   6.7  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.9  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   8.9  

>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 219 VYDNEDGSVKKYGTVDDSVIDIVKVNGTGPLYVLTEDHTV--YKVTEEG 359
           V+DN   S   +GT  D +  I   +    LYVL E  +V  Y++T+ G
Sbjct: 230 VFDNFIPSFFSFGTHGDGIKQIAVDDSRSLLYVLRETSSVSCYELTKNG 278


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 189 AFFGAKSGIYVYDNEDGSVKKYGTVDDSVI 278
           AFF +K  I +  +EDG+VK + T+  S+I
Sbjct: 234 AFFHSKFPIIISGSEDGTVKIWHTLSYSLI 263


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 408 LDYSDNVYFYGPDKKPKVVTEN 473
           L Y+D + +YGPD K  V++ N
Sbjct: 325 LPYNDYLQYYGPDYKLNVLSNN 346


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 234 DGSVKKYGTVDDSVIDIVKVNGTGPLYVLTED----HTVYKVTEEGNK 365
           DG V+   T     +D++ V+ TG  + L  D     TV+++T E  K
Sbjct: 73  DGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAK 120


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +3

Query: 234 DGSVKKYGTVDDSVIDIVKVNGTGPLYVLTED----HTVYKVTEEGNK 365
           DG V+   T     +D++ V  TG  + L  D     TV+++T E  K
Sbjct: 73  DGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +3

Query: 234 DGSVKKYGTVDDSVIDIVKVNGTGPLYVLTED----HTVYKVTEEGNK 365
           DG V+   T     +D++ V  TG  + L  D     TV+++T E  K
Sbjct: 73  DGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 213 IYVYDNEDGSVKKYGTVDDSVIDIVKVNGTGPLYVLTEDH 332
           +Y+ + +DG VK+    D S++DI    G G L+  + ++
Sbjct: 130 VYMLNKQDGKVKRSYLGDSSLLDIDTSKG-GDLFATSGEN 168


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 117 KNGTATKMLDDGTSSTASIDDS-KLAFFGAKSGIYVYDN 230
           +NGTA  +L  GT  T+ +     L ++G + G+YV DN
Sbjct: 471 ENGTARLIL--GTMITSLLFPGIPLLYYGDEQGMYVLDN 507


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 157 ARPHPSTTLNWRS 195
           +R HP+TT NWR+
Sbjct: 308 SRNHPATTSNWRT 320


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 214 IPDLAPKNANLESSMDAVELVPSSSIFVAVPF 119
           +P   PK + ++ S+ +   VPSS+     PF
Sbjct: 758 VPPTGPKASEIKDSVSSNNAVPSSTFNFVSPF 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,269
Number of Sequences: 5004
Number of extensions: 32643
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)