Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32277
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000265-5|AAK68197.1|  331|Caenorhabditis elegans Hypothetical ...    31   0.65 
U41007-2|AAA82265.1|  248|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC024831-12|AAW57824.1|  356|Caenorhabditis elegans Serpentine r...    29   2.0  
AC006627-9|AAK85464.1|  367|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z81520-4|CAE17808.1|  181|Caenorhabditis elegans Hypothetical pr...    28   3.4  

>AF000265-5|AAK68197.1|  331|Caenorhabditis elegans Hypothetical
           protein C18E3.5 protein.
          Length = 331

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
 Frame = +3

Query: 174 DDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVKVNGTGPLYVLT-EDHTVYKVT 350
           D S L   G    + V+D E GS  +       +++ V VN  GP  + +  D     V 
Sbjct: 90  DSSHLVSAGTDKTVRVWDMETGSCIRNFKSHTDIVNSVDVNRRGPQMICSASDDGTVMVH 149

Query: 351 EEGNKKVAVDGAKDAQQIML---DYSDNVYFYGPDKKPKV 461
           +  +K+ A       QQ  +   D +DNV   G D + KV
Sbjct: 150 DMRSKEAAKKFICKYQQTAVTFNDAADNVICGGIDNQIKV 189


>U41007-2|AAA82265.1|  248|Caenorhabditis elegans Hypothetical
           protein C33H5.6 protein.
          Length = 248

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = +3

Query: 120 NGTATKMLDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGS------VKKYGTVDDSVID 281
           N T+ K+LD      A  DD       A+  + VYD  DGS       KKYG      +D
Sbjct: 25  NETSNKLLD-----LAYSDDGNNLIVSAEDVVLVYDLRDGSKGKSIECKKYGVNCLEYLD 79

Query: 282 IVKVNGTGP 308
            VK   +GP
Sbjct: 80  TVKCVHSGP 88


>AC024831-12|AAW57824.1|  356|Caenorhabditis elegans Serpentine
           receptor, class t protein23 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 170 GCGRACTVIKHFRGRTVFVSIKALVFLNLAI 78
           G  R C V +H R RT+F+  K  +FL +A+
Sbjct: 137 GINRCCDVNQHLRIRTIFIGRK--IFLTIAV 165


>AC006627-9|AAK85464.1|  367|Caenorhabditis elegans Hypothetical
           protein E01A2.7 protein.
          Length = 367

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
 Frame = +3

Query: 96  YKGLYRYKNGTATKMLDDGTSSTASI--DDSKLAFFGAKS----GIYVYDNEDGSVKKYG 257
           YKG   Y NG  ++ L +   +   I   D K  F    +    G+Y ++ +DG ++K  
Sbjct: 199 YKGGLVYYNGKKSQFLMENNIANGIILSRDQKTLFVSHINQETIGVYTWNQKDGEIQK-- 256

Query: 258 TVDDSVIDIVKVNGTGPLYVLTEDH 332
                + +I  + G    YV T+DH
Sbjct: 257 -----ISEIETLTGCDNFYVDTQDH 276


>Z81520-4|CAE17808.1|  181|Caenorhabditis elegans Hypothetical
           protein F31B9.4 protein.
          Length = 181

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +1

Query: 121 TVRPRKCLMTVQARPHPSTTLNWRSSAPNPVFTFTTTKTAALRNT 255
           ++  R  ++T   RP+ STT    S APN   T TTT  A   NT
Sbjct: 11  SIPSRDPVITTTIRPN-STTTTTTSPAPNITTTTTTTTIAPPTNT 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,978,276
Number of Sequences: 27780
Number of extensions: 183358
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)