Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32272
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1040 + 8163654-8163704,8163814-8163935,8164011-8164092,816... 147 5e-36
03_06_0143 + 31962241-31962291,31962385-31962506,31962572-319626... 147 5e-36
09_04_0439 - 17594131-17594271,17595018-17595100,17595199-175953... 57 1e-08
08_02_1017 - 23616244-23616381,23616471-23616537,23617160-236172... 55 3e-08
03_04_0044 + 16754638-16754676,16755472-16755598,16756325-167564... 31 0.73
02_05_0749 + 31468643-31469086 29 2.2
01_01_0277 + 2274383-2274465,2274889-2274955,2275040-2275110,227... 29 2.2
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 29 2.9
12_02_0852 - 23690015-23690545 28 5.1
09_05_0007 - 20036981-20037159,20037690-20037943,20038103-200383... 28 5.1
03_06_0354 - 33333634-33333840,33334106-33334213,33335384-333355... 28 5.1
11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640... 27 6.8
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598... 27 6.8
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 27 6.8
03_06_0388 + 33564096-33564485,33564642-33564812,33565125-335651... 27 6.8
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 27 8.9
03_03_0230 - 15623648-15623653,15624333-15624383,15624477-156245... 27 8.9
>06_01_1040 +
8163654-8163704,8163814-8163935,8164011-8164092,
8164166-8164213,8164516-8164671,8164747-8164843,
8164942-8164984,8165375-8165442,8165533-8165617,
8165698-8165746,8165968-8166040,8166119-8166179,
8167114-8167180,8167400-8167453,8167537-8167665,
8168192-8168255,8168366-8168439,8168523-8168576,
8168696-8168764,8169394-8169483,8169656-8169763,
8169876-8169923
Length = 563
Score = 147 bits (356), Expect = 5e-36
Identities = 70/142 (49%), Positives = 95/142 (66%), Gaps = 1/142 (0%)
Frame = +1
Query: 55 KVHFVSNIDGTHLAEVLKKLNPETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAV 234
++ F++N+D +A +K L+PET L ++ SKTFTT ET+ NA + K W + S P AV
Sbjct: 197 QLRFLANVDPVDVARSIKDLDPETTLVVVVSKTFTTAETMLNARTLKEWIVSSL-GPDAV 255
Query: 235 ARHFVALSTNAEKVTAFGIDANNMFGFWDWVGGRYSLWSAIG-LSISLYIGHENFEKLLD 411
A+H +A+STN E V FGID N F FWDWVGGRYS+ SA+G L +SL G +K L+
Sbjct: 256 AKHMIAVSTNLELVEKFGIDPKNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFPIVQKFLE 315
Query: 412 GANFMDQHFVTAPLEKNAPVIL 477
GA +D+HF ++ EKN P IL
Sbjct: 316 GAASIDKHFRSSSFEKNIPAIL 337
>03_06_0143 +
31962241-31962291,31962385-31962506,31962572-31962671,
31962775-31962822,31963096-31963251,31963330-31963426,
31963525-31963567,31963970-31964037,31964139-31964223,
31964297-31964345,31964566-31964638,31964708-31964768,
31965417-31965483,31965709-31965762,31965854-31965982,
31966485-31966548,31966655-31966728,31966793-31966867,
31966972-31967040,31967759-31967848,31968014-31968121,
31968251-31968298
Length = 576
Score = 147 bits (356), Expect = 5e-36
Identities = 70/142 (49%), Positives = 95/142 (66%), Gaps = 1/142 (0%)
Frame = +1
Query: 55 KVHFVSNIDGTHLAEVLKKLNPETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAV 234
++ F++N+D +A +K L+PET L ++ SKTFTT ET+ NA + K W + S P AV
Sbjct: 203 QLRFLANVDPVDVARSIKDLDPETTLVVVVSKTFTTAETMLNARTLKEWIVSSL-GPDAV 261
Query: 235 ARHFVALSTNAEKVTAFGIDANNMFGFWDWVGGRYSLWSAIG-LSISLYIGHENFEKLLD 411
A+H +A+STN E V FGID N F FWDWVGGRYS+ SA+G L +SL G +K L+
Sbjct: 262 AKHMIAVSTNLELVEKFGIDPKNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFPIVQKFLE 321
Query: 412 GANFMDQHFVTAPLEKNAPVIL 477
GA +D+HF ++ EKN P IL
Sbjct: 322 GAASIDKHFRSSSFEKNIPAIL 343
>09_04_0439 -
17594131-17594271,17595018-17595100,17595199-17595355,
17595438-17595576,17595668-17595720,17596150-17596257,
17596345-17596413,17596505-17596570,17596651-17596794,
17597372-17597455,17597539-17597637,17597753-17597875,
17598283-17598831
Length = 604
Score = 56.8 bits (131), Expect = 1e-08
Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Frame = +1
Query: 28 ALKPYANHLKVHFVSNIDGTHLAEVLKKLNPETA--LFIIASKTFTTQETITNASSAKTW 201
AL P LK+ F+ N D + + +L PE A L I+ SK+ T ET +
Sbjct: 215 ALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVIVISKSGGTPETRNGLLEVQKA 274
Query: 202 F----LESAKDPSAVARHFVALSTNAEKVTAFGIDANNMFGFWDWVGGRYSLWSAIGLSI 369
F L+ +K AV + +L N ++ + F +DWVGGR S SA+GL
Sbjct: 275 FRDAGLDFSKQGVAVTQEN-SLLDNTARIEGWLA----RFPMFDWVGGRTSEMSAVGLLP 329
Query: 370 SLYIGHENFEKLLDGANFMDQHFVTAPLEKNAPVILALLGVW 495
+ G + +++L GA MD+ +++N +LAL W
Sbjct: 330 AALQGID-IKEMLVGAALMDEETRNTVVKENPAALLALCWYW 370
>08_02_1017 -
23616244-23616381,23616471-23616537,23617160-23617238,
23617330-23617486,23617581-23617719,23617820-23617872,
23618037-23618120,23618291-23618359,23618488-23618553,
23618657-23618800,23619331-23619414,23619498-23619596,
23620097-23620219,23620745-23621290
Length = 615
Score = 55.2 bits (127), Expect = 3e-08
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Frame = +1
Query: 28 ALKPYANHLKVHFVSNIDGTHLAEVLKKLNPETA--LFIIASKTFTTQETITNASSAKTW 201
AL P L + F+ N D + + +L PE A L I+ SK+ T ET +
Sbjct: 214 ALAPDNPPLMIRFIDNTDPAGIDHQIAQLGPELASTLVIVISKSGGTPETRNGLLEVQKA 273
Query: 202 F----LESAKDPSAVARHFVALSTNAEKVTAFGIDANNMFGFWDWVGGRYSLWSAIGLSI 369
F LE +K A+ + +L N ++ + F +DWVGGR S SA+GL
Sbjct: 274 FRDAGLEFSKQGVAITQEN-SLLDNTARIEGWLA----RFPMFDWVGGRTSEMSAVGLLP 328
Query: 370 SLYIGHENFEKLLDGANFMDQHFVTAPLEKNAPVILALLGVWYHNFYGA 516
+ G + +++L GA MD+ +++N +LAL W + G+
Sbjct: 329 AALQGID-IKEMLVGAAQMDEETRNTEIKENPAALLALCWYWASDGIGS 376
>03_04_0044 +
16754638-16754676,16755472-16755598,16756325-16756451,
16756866-16757431,16757896-16758211,16758373-16758613,
16758734-16758823,16759343-16759780,16759877-16760185,
16760392-16760406
Length = 755
Score = 30.7 bits (66), Expect = 0.73
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 389 SCPMYSEMDRPIADHSEYLPPTQSQKP 309
S P Y+ M +P++ H+ YLPP P
Sbjct: 667 STPFYNMMGQPMSPHTAYLPPHNGHAP 693
>02_05_0749 + 31468643-31469086
Length = 147
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +1
Query: 214 AKDPSAVARHFVALSTNAEKVTAFGIDANNMFGFWDWVGGRYSLWSAIGLSISLYIGHEN 393
A D A AR + AE+V + G++ W W GGR W + L +G
Sbjct: 68 ADDVEAAARRD---AMEAEEVCSHGMEGRAARWGWGWKGGRRDGWMDGDAACGLSLGFSG 124
Query: 394 FEKLLD 411
LLD
Sbjct: 125 VLGLLD 130
>01_01_0277 +
2274383-2274465,2274889-2274955,2275040-2275110,
2275550-2275667,2275755-2275828,2276094-2276149,
2276237-2276320,2276422-2276509,2276602-2276679,
2276814-2276870,2277074-2277578
Length = 426
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 392 FSCPMYSEMDRPIADHSEYLPPTQSQKPNMLLASIPNAVTFSA 264
F CPMY ++ +A + KP+++ AS P + F A
Sbjct: 75 FPCPMYGKVPLSLALSPRIISEVAKFKPDIIHASSPGIMVFGA 117
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 28.7 bits (61), Expect = 2.9
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = -2
Query: 332 PPTQSQKPNMLLASIPNAVTFSAFVDKATKCLATAEGSLADSRNHVLAELALVIVSCVVK 153
P TQ N+L S + +T + F + + EGS DSR+ + E A S K
Sbjct: 3182 PDTQHALRNVLEMSPSDNLTDNPFAGQEHGSFS--EGSTTDSRDAITDESATTSTSGSEK 3239
Query: 152 VLDAMMNSA 126
VLDA + +A
Sbjct: 3240 VLDASILTA 3248
>12_02_0852 - 23690015-23690545
Length = 176
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Frame = +2
Query: 350 PQSVCP----SRCTSDTKTSRNFWTEPI--SWTSTSSPHRW 454
P S+ P SRCTSD + WT + W +T + RW
Sbjct: 121 PSSMMPATRASRCTSDPRHPGRIWTVGVWQRWLATVAAGRW 161
>09_05_0007 -
20036981-20037159,20037690-20037943,20038103-20038355,
20038447-20038640,20039122-20039252,20039378-20039488,
20039834-20039932
Length = 406
Score = 27.9 bits (59), Expect = 5.1
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 28 ALKPYANHLKVHFVSNIDGTHLAEVLKK-LNPETALFIIASKTFTTQETITNASSAKTWF 204
A++P+ L V + G+ LA +K L+P ++ F T I A TWF
Sbjct: 271 AIQPFLPPLSVFVTALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFIAGYHLAGTWF 330
Query: 205 LESAKDPSAVAR 240
ESA D A+ R
Sbjct: 331 RESA-DVKALQR 341
>03_06_0354 -
33333634-33333840,33334106-33334213,33335384-33335557,
33335637-33335765,33335858-33336145,33336257-33336489,
33336607-33337435
Length = 655
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 193 KTWFLESAKDPSAVARHFVALSTNAE 270
KTW + K + VAR FVAL++ E
Sbjct: 430 KTWMSAAQKSSNVVARFFVALNSRKE 455
>11_04_0474 +
18162538-18163731,18163800-18163855,18163951-18164011,
18164107-18165495,18166024-18166635,18166706-18166852,
18166941-18167209,18167322-18167412,18167500-18167757,
18168376-18168450,18168937-18168945
Length = 1386
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Frame = -2
Query: 488 PNRAKITGAFFSSGAVTKCWSMKLAPSRSFSKFSCPMYSEMDRPIAD-HSEY----LP-P 327
PN A S +++ + SFSK P + M P+ D H++Y LP P
Sbjct: 457 PNATSTNAAAPSGQVLSERLPFESGAGNSFSKVEIPAKNRMVSPLLDLHADYDENSLPSP 516
Query: 326 TQSQKP 309
T+ KP
Sbjct: 517 TRDSKP 522
>09_02_0224 -
5984128-5984923,5985667-5986718,5986800-5987776,
5988427-5989228,5990966-5991016,5992391-5993464,
5994458-5994706
Length = 1666
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = -2
Query: 458 FSSGAVTKCWSMKLAPSRSFSKFSCPMYSEMDRPIADHSEYLPPTQSQKPN 306
FSS VTK S+KL S S + S + S + IAD S+ L + K N
Sbjct: 676 FSSSTVTKSSSIKLPSSNSNHELS-SLSSPTEHVIADGSKSLQLVPASKIN 725
>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 341 RCGPQSVCPSRCTSDTKTSRNFWTEPISWTSTSSPHRW 454
R P+ VCP C S S N TE IS + ++ ++W
Sbjct: 1363 RAAPE-VCPEHCISVFNKSVNQLTEEISAAAYTASNQW 1399
>03_06_0388 +
33564096-33564485,33564642-33564812,33565125-33565145,
33565260-33565467,33566156-33566346,33566465-33566584,
33566703-33566936
Length = 444
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -2
Query: 308 NMLLASIPNAVTFSA-FVDKATKCLATAEGSLADSRNHVLAELALVIVSCVVKVLDAMMN 132
NM++ S+ N + + D A KC T EGS + N V +A +S L+ N
Sbjct: 340 NMVMNSVKNPIIIDQNYCDSAKKC-ETQEGSAVEISNVVFKNIAGTTISKSAITLNCSKN 398
>10_08_0509 + 18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 64 FVSNIDGTHLAEVLKKLNPETALFIIASKTFTTQETITNAS 186
F+S+ + THL + +KLNP+ +L T E ++ S
Sbjct: 979 FLSDDNKTHLLNMSRKLNPKRSLLSFVGVIINTIELLSALS 1019
>03_03_0230 -
15623648-15623653,15624333-15624383,15624477-15624546,
15624646-15624848,15625011-15625116,15625228-15625295,
15625410-15625453,15628360-15628602,15629482-15629691,
15630207-15630287,15630289-15630355,15632167-15632386,
15632534-15632646,15634322-15634416,15634509-15634629
Length = 565
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 351 GPQRISAPDPVPEAEHVVSVDTERGDLLG 265
GP+ P P P EH++ VD G+++G
Sbjct: 71 GPEE-RLPHPKPPTEHLICVDWRLGEVVG 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,030,725
Number of Sequences: 37544
Number of extensions: 282706
Number of successful extensions: 1082
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -