Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32271
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...   237   7e-64
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    62   6e-11
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    29   0.55 
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.7  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    25   8.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   8.9  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   8.9  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   8.9  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    25   8.9  

>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score =  237 bits (580), Expect = 7e-64
 Identities = 111/170 (65%), Positives = 130/170 (76%)
 Frame = +2

Query: 5   AGTEHLGKPVFGTVKEAKAGTGATASVIYVPPPGXXXXXXXXXXXXMPLIVCITEGVPQH 184
           AGT HLGKPVFGT++EA   T A AS ++VPPP             +PLIV ITEG+PQH
Sbjct: 76  AGTTHLGKPVFGTIEEAMKETKADASAVFVPPPLAAGAIEEAIAAEVPLIVAITEGIPQH 135

Query: 185 DMVRVKHALLRQNKSRLVGPNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTYTYEAC 364
           DM+RV   L  Q+KSRLVGPNCPGII P +CKIGIMP+ +HK GCIG+VSRSGT TYEA 
Sbjct: 136 DMLRVSDILKTQSKSRLVGPNCPGIIRPGQCKIGIMPSHIHKPGCIGIVSRSGTLTYEAV 195

Query: 365 HQTTITGXGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEIGG 514
           +QTT T  GQ+L +GIGGDPF GT+FID L++FL DP T+GIILIGEIGG
Sbjct: 196 NQTTQTDLGQSLVIGIGGDPFPGTNFIDALKLFLDDPNTQGIILIGEIGG 245


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 61.7 bits (143), Expect = 6e-11
 Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 13/182 (7%)
 Frame = +2

Query: 8   GTEHLGKPVFGTVKEAKAGTGATASVIYVPPPGXXXXXXXXXXXXMPLIVCIT---EGVP 178
           GT+ +  PV+ T++EA         V+                   P I CI    EGVP
Sbjct: 64  GTKEILLPVYRTIEEA-CTKHPEVDVVVNFASSRSAYASTMELMEFPQIRCIAIIAEGVP 122

Query: 179 QHDMVRVKHALLRQNKSRLV--GPNCPGIIAPEKCKIG--------IMPAAVHKRGCIGV 328
           +    R +  L+   +  +V  GP   G I P   KIG        I+ + +++ G +  
Sbjct: 123 ER---RAREILVTSKEKNVVIIGPATVGGIKPGCFKIGNTGGMMDNIVASKLYRPGSVAY 179

Query: 329 VSRSGTYTYEACHQTTITGXGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEI 508
           VS+SG  + E  +  + T  G    + IGGD + GT FID L  F  DP  K ++L+GE+
Sbjct: 180 VSKSGGMSNELNNIISHTTDGVYEGIAIGGDRYPGTTFIDHLIRFEADPACKLMVLLGEV 239

Query: 509 GG 514
           GG
Sbjct: 240 GG 241


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 280 FTLLRSNDTRTVRTNQSRLVLSQEGMFYSHHIMLWHTFCNAHNEGHFSLN 131
           +TLL  N T  +R +QS +     G  + H    W T  N  N  + S N
Sbjct: 186 YTLLLQNTTVVIRRDQSVVYTGDVGTNFFHSPTKWITHSNVSNGYYTSRN 235


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 507 ISPMRMMPLVSGSLRKT--SKQSMKSVPLKGSPPIPT 403
           +S  R  P+++    K   SKQ+++S P + S P+P+
Sbjct: 278 LSLARSSPILTSEKLKNGASKQAIESPPFRASEPLPS 314


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +2

Query: 251 PGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTYTYEACH 367
           P +    K  I + P A+H    +  +S     TY  CH
Sbjct: 235 PSLWPSTKEFIKMHPNALHPNNALNFISNDDGETYNGCH 273


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 144 CPSLCALQKVCHN 182
           CP LC L K CH+
Sbjct: 642 CPYLCVLPKSCHH 654


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 307 VHCSWHDTNFTLLRSNDTRTVRTNQSRLVLSQEGMFYS 194
           + C W+ TN  L    + R     QSR +   +G  +S
Sbjct: 639 ISCPWYGTNVKLFTVREVRQPTILQSRSLGEFQGRLFS 676


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = -1

Query: 270 SGAMIPGQLGPTSLDLFCLKRACFTRTISCCG-TPSVM 160
           S   IP  +    L    +K  C  R+ SCCG  P VM
Sbjct: 86  SSCSIPSSISEKLLPRDNVKTHCPKRSASCCGKKPDVM 123


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 510 PISPMRMMPLVSGSLRKTSKQSMKSVPLKGSPPIPTH 400
           P  PMR  PL       ++  +    P +  PP+PTH
Sbjct: 16  PEQPMRK-PLSGSYSHNSAGPTPNMSPFEQKPPLPTH 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,733
Number of Sequences: 5004
Number of extensions: 38947
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)