Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32271
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1015 + 23307700-23307906,23309274-23309483,23309915-233100... 246 6e-66
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985... 55 3e-08
08_02_0873 + 22100124-22100810 29 1.7
12_02_0090 + 13493311-13494180 29 2.2
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 28 3.9
11_04_0457 + 17916177-17916526,17917397-17917523,17917887-179182... 28 5.1
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 28 5.1
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340... 27 8.9
02_01_0730 - 5468899-5469517,5470066-5470127,5470225-5470353 27 8.9
01_03_0242 + 14113721-14113966,14114102-14114260,14114495-141148... 27 8.9
>07_03_1015 +
23307700-23307906,23309274-23309483,23309915-23310085,
23310163-23310286,23310753-23310814,23311185-23311266,
23311870-23312009
Length = 331
Score = 246 bits (603), Expect = 6e-66
Identities = 112/169 (66%), Positives = 132/169 (78%)
Frame = +2
Query: 8 GTEHLGKPVFGTVKEAKAGTGATASVIYVPPPGXXXXXXXXXXXXMPLIVCITEGVPQHD 187
GTEHLG PVF +V EAKA T A ASVIYVPPP + L+VCITEG+PQHD
Sbjct: 79 GTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHD 138
Query: 188 MVRVKHALLRQNKSRLVGPNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTYTYEACH 367
MV+VK AL +Q+K+RL+GPNCPGII P +CKIGIMP +HK G +G+VSRSGT TYEA
Sbjct: 139 MVKVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVF 198
Query: 368 QTTITGXGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEIGG 514
QTT G GQ+ CVGIGGDPFNGT+F+DCLE F+ DP+T+GI+LIGEIGG
Sbjct: 199 QTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVDDPQTEGIVLIGEIGG 247
>01_02_0089 -
10997882-10997957,10998139-10998423,10998519-10998589,
10998685-10998761,10998858-10998963,10999062-10999189,
10999291-10999423,11000005-11000133,11000220-11000375,
11000770-11000846,11000938-11000998,11001249-11001383,
11001642-11001765,11001852-11001917,11002010-11002112,
11002603-11002652,11003795-11003895
Length = 625
Score = 55.2 bits (127), Expect = 3e-08
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Frame = +2
Query: 149 LIVCITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGIIAPEKCKIG--------IMPAAV 304
++ I EGVP+ D ++ + R N ++GP G I KIG I+ +
Sbjct: 123 VVAIIAEGVPESDTKQLI-SYARANNKVIIGPATVGGIQAGAFKIGDTAGTIDNIIQCKL 181
Query: 305 HKRGCIGVVSRSGTYTYEACHQTTITGXGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETK 484
++ G +G VS+SG + E + G + IGGD F G+ D + F P+ K
Sbjct: 182 YRPGSVGFVSKSGGMSNEMYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVK 241
Query: 485 GIILIGEIGG 514
++++GE+GG
Sbjct: 242 MMVVLGELGG 251
>08_02_0873 + 22100124-22100810
Length = 228
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Frame = +2
Query: 230 RLVGPNCPGIIAPEKCKIGIMPAAVHKRGCIGV-----VSRSGTY-TYEACHQTTITGXG 391
R P+C G + PE C+ G +P V +R C + TY Y C + +
Sbjct: 77 RCPDPSCGGALDPELCR-GALPGDVFERWCAALCEAMFAGARRTYCPYPGCSEMMVADAD 135
Query: 392 QTLCVGI 412
C G+
Sbjct: 136 DEGCAGV 142
>12_02_0090 + 13493311-13494180
Length = 289
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = -3
Query: 451 AVNEVCSIEGIPSNTDTQSLAXASNSSLMTGFIGICPRTRYNSDAT 314
+VN + SI G+PS T T SLA + S+ + + PR+ +S +T
Sbjct: 126 SVNPILSIIGVPSPTTTSSLATTTTSTAV-----LFPRSTLSSAST 166
>11_04_0340 -
16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 297 LQCTNVVASELYRVLGHIPMKPVIRLLLLAXAKLCVSVLEGIPSMEQTSL 446
LQ ++V +R+LG + M PV+R L L K+ V IPS+E+ L
Sbjct: 816 LQTIHLVNCREWRILGSLEMLPVLRELKL--VKMWNLVELSIPSLEKLIL 863
>11_04_0457 +
17916177-17916526,17917397-17917523,17917887-17918287,
17918496-17918704,17919328-17919449,17920437-17920562,
17920675-17920801,17920945-17921000
Length = 505
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 267 GAMIPGQLGPTSLDLFCLKRACFTRTISCCGTP 169
G+ P G TSLD+ C + +T +S G P
Sbjct: 106 GSSRPAAYGSTSLDMLCDRTIDYTEQLSVMGKP 138
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 146 PLIVCITEGVPQHDMVRVKHALLR 217
PL+ CIT VPQ + ++HA+ +
Sbjct: 757 PLVACITRLVPQKGLHLIRHAIYK 780
>03_06_0399 -
33632811-33633107,33633236-33633385,33633705-33634029,
33635315-33635982,33636967-33637212,33637405-33637545,
33637807-33637856,33637943-33638060,33638304-33638910,
33639339-33639463,33639813-33639869,33639952-33640023,
33640100-33640232,33640305-33640428,33640522-33640576,
33640672-33641322
Length = 1272
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 510 PISPMRMMPLVSGSLRKTSKQSMKSVPLKGSPPIPT 403
P SP+ P L+K+S+ + + P+ GSPP P+
Sbjct: 15 PASPVASPPRRLKRLKKSSQIATAAHPVVGSPPPPS 50
>02_01_0730 - 5468899-5469517,5470066-5470127,5470225-5470353
Length = 269
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 254 GIIAPEKC-KIGIMPAAVHKRGC-IGVVSRSGTYTYEA 361
G++APE K+G++PA GV+ +GTYTY A
Sbjct: 108 GMVAPELLGKLGLVPAETAIPWFQTGVIPPAGTYTYWA 145
>01_03_0242 +
14113721-14113966,14114102-14114260,14114495-14114868,
14114939-14115419,14115651-14116192,14116253-14116531,
14116837-14116918,14116994-14117086,14117173-14117367
Length = 816
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 342 PERDTTPMQPRLCTAAGMIPIL 277
P+ DT+ QP+ C A +IPI+
Sbjct: 440 PQPDTSKEQPKTCEARKLIPIM 461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,221,608
Number of Sequences: 37544
Number of extensions: 283571
Number of successful extensions: 702
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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