Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32261
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    29   2.0  
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    27   6.0  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    27   6.0  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    27   6.0  
AL132904-13|CAC35846.4|  778|Caenorhabditis elegans Hypothetical...    27   8.0  

>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 145 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTHFRCY 5
           +AW  D    + +N +  E + LS+   Q+HC+    CQ+D +   Y
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTY 546


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +1

Query: 367 SPARREAYHSRASHTHIRCQQXGHTHIRCQQGGPTQRXRLRLQIPYYPLR 516
           SP RR+ +HSR+S  +I      H+ +R ++   +QR +L+ Q     LR
Sbjct: 21  SPHRRQPHHSRSSSNNISSSL--HSRLRRRRRSRSQRKQLQWQQQQLRLR 68


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 145 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTHFRCY 5
           +AW  D    + +N +  E + LS+   Q+HC+    CQ+D +   Y
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTY 546


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 61  GRRNWKVHSFPVQPSLLY 114
           GR++WK H F ++PS LY
Sbjct: 340 GRKSWKKHYFVLRPSGLY 357


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 61  GRRNWKVHSFPVQPSLLY 114
           GR++WK H F ++PS LY
Sbjct: 357 GRKSWKKHYFVLRPSGLY 374


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 61  GRRNWKVHSFPVQPSLLY 114
           GR++WK H F ++PS LY
Sbjct: 469 GRKSWKKHYFVLRPSGLY 486


>AL132904-13|CAC35846.4|  778|Caenorhabditis elegans Hypothetical
           protein Y111B2A.17 protein.
          Length = 778

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 466 DHLADNVCGCDHXAGNVCGC 407
           +++AD + GCD   G+VCGC
Sbjct: 99  EYVAD-LTGCDGSVGSVCGC 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,635,318
Number of Sequences: 27780
Number of extensions: 165592
Number of successful extensions: 566
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)