Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32260
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    35   0.006
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   0.88 
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   2.0  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   2.7  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    26   2.7  
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc...    26   2.7  
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces...    25   8.2  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    25   8.2  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   8.2  
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    25   8.2  

>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 318 GWWKYEFCYGKHVLQYHID 374
           G+W Y++ YG+HV QYH++
Sbjct: 132 GYWTYDYVYGQHVRQYHLE 150


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 213 PPKSVPSVDKRPPPITDDSPV 275
           PP+S PS  ++PPP++    V
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAV 385


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 212 PTEVSTERRQAPSANHG*FSRTSLP*RGKLSKWWYRL 322
           PT  +T +  AP  N G FS    P    L+KW  +L
Sbjct: 580 PTSATTSKLMAPMDNIGKFSGFERPPETLLNKWRQQL 616


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 219 KSVPSVDKRPPPITDDSPV 275
           K++PS+ K+P P+ D +P+
Sbjct: 496 KTLPSIGKKPIPLLDPNPI 514


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 360 QYHIDRAGEKTTVMLGRFDEKAHLDWIKDNKGKAPKPIDQRIS 488
           QYH D   +K  + +G + +     WI     KA K ++++ S
Sbjct: 23  QYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQAS 65


>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 394 VVFSPARSMWYWSTCFP*QNSYFHQPVPPFRQFSPLRKARTGESSV 257
           V+FSP+  +W  S  FP    YF        + S ++   T ES V
Sbjct: 149 VIFSPSALLWDQSINFPRTTRYFTSQGLQITKKSIIKDVETPESYV 194


>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 336 FCYGKHVLQYHIDRAGEKT 392
           F YG HVL+ H+ R  + T
Sbjct: 107 FLYGNHVLKAHVGRITDDT 125


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 326 EIRVLLRKARAPVPHRSRRREDHRNVGS 409
           E++ L RK +  +PH ++RR+  R VGS
Sbjct: 213 ELQGLTRKPKESIPHPTKRRK--RAVGS 238


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 411 FDEKAHLDWIKDNKGKAPKPID 476
           FDE   +D++ D K  A  P+D
Sbjct: 377 FDESQQIDFLLDTKLSAENPVD 398


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +3

Query: 72  IRLMDNADQTVKDILAVLKVGKFEKDGE 155
           ++++DN+  T+ + + V++ GKF   G+
Sbjct: 8   LKVIDNSGATLAECIRVVRAGKFASLGD 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,917
Number of Sequences: 5004
Number of extensions: 44369
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)