Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32260
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-2|CAB60843.3|  534|Caenorhabditis elegans Hypothetical ...    91   4e-19
U23514-6|AAC46544.2|  816|Caenorhabditis elegans Hypothetical pr...    36   0.021
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AC024751-8|AAK21510.3|  369|Caenorhabditis elegans Hypothetical ...    28   3.2  
Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical pr...    27   5.6  
U23448-8|AAL27226.1|  849|Caenorhabditis elegans Dnaj domain (pr...    27   5.6  
U23448-7|AAM81128.1|  868|Caenorhabditis elegans Dnaj domain (pr...    27   5.6  
U23448-6|AAL27225.1|  915|Caenorhabditis elegans Dnaj domain (pr...    27   5.6  
U23448-5|AAL27227.1|  912|Caenorhabditis elegans Dnaj domain (pr...    27   5.6  
AL117202-3|CAB55094.2|  691|Caenorhabditis elegans Hypothetical ...    27   7.4  
AC024852-4|AAT81182.1|  794|Caenorhabditis elegans Conserved oli...    27   7.4  
AB212858-1|BAE66673.1|  792|Caenorhabditis elegans COGC-3 protein.     27   7.4  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    27   9.8  
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    27   9.8  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    27   9.8  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    27   9.8  
AL132948-3|CAC51073.1|  161|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AL132876-2|CAB60843.3|  534|Caenorhabditis elegans Hypothetical
           protein Y105E8A.2 protein.
          Length = 534

 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 33/57 (57%), Positives = 44/57 (77%)
 Frame = +3

Query: 273 VRAFLNGENCLNGGTGWWKYEFCYGKHVLQYHIDRAGEKTTVMLGRFDEKAHLDWIK 443
           V   L GE+C+ GGTGWWKYEFCYGKHV+Q+H D  G+++ ++LG FDE  H +W+K
Sbjct: 343 VNRILTGEDCIVGGTGWWKYEFCYGKHVIQFHEDANGQRSDILLGVFDEVVHKEWVK 399



 Score = 36.3 bits (80), Expect = 0.012
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
 Frame = +3

Query: 321 WWKYEFCYGKHVLQYHIDR--AGE--KTTVMLGRFD 416
           +W Y+ C+G++V+QYH D+   G+  +T   LG FD
Sbjct: 116 YWTYQVCHGRYVIQYHEDKMLTGQVSRTEFYLGNFD 151


>U23514-6|AAC46544.2|  816|Caenorhabditis elegans Hypothetical
           protein F48E8.4 protein.
          Length = 816

 Score = 35.5 bits (78), Expect = 0.021
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +3

Query: 183 LGDDEDMTSDPPKSVPSVDKRPPPITDDSPVRAFLNGENCLNGGTGWWKYEFCYGKHVLQ 362
           L D ED+  D PKS      + P I  D+   +F   +     G  WW Y  C G+ + Q
Sbjct: 91  LPDVEDVKKDKPKS-----SKNPKIYGDALAASFYVDKCVKLRGNHWWSYILCRGQTIEQ 145

Query: 363 YHIDRAGEKTTV--MLGRFD 416
            H    G++  V  +LG FD
Sbjct: 146 VH-GEPGQEGYVKNILGLFD 164


>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical protein
            F38E11.5 protein.
          Length = 1000

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
 Frame = +3

Query: 66   SSIRLMDNADQTVKDIL--AVLKVG-KFEKDGETHLKFELHPLGDDEDMTSDPPKSV--- 227
            +S+R+   A + +++ L  AV      F  DG+  LK    P   +  + + PP SV   
Sbjct: 824  ASVRVPSAATRNIQEELDEAVASGAVSFTDDGQAVLKNA--PRQTETQLKAPPPPSVARQ 881

Query: 228  PSVDKRPPPITDDSPVR 278
            PS  ++P PI + SP+R
Sbjct: 882  PSPVRQPSPIREPSPIR 898


>AC024751-8|AAK21510.3|  369|Caenorhabditis elegans Hypothetical
           protein Y18H1A.7 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 296 KLSKWWYRLVEIRVLLRKARAPVPHRSRRREDHRNVGS 409
           K++  + +LVEI  +  KA  P P R R R+  R  GS
Sbjct: 250 KIALDFKKLVEISKIALKAEIPEPERKRLRKSPRLAGS 287


>Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical
           protein B0240.2 protein.
          Length = 774

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -3

Query: 485 NSLIYRFRSLPFIILDPVQMRFLIK-STQHYGGLLAGAIYVVLEHVLSVAELVFPPACT 312
           NS++  FR++  I L  + M FL+      Y   +  +I  ++ HV  +  L+FP   T
Sbjct: 75  NSIVLLFRNILMIELFGIVMYFLLSFKYSQYPEFIGTSISTII-HVFLIFTLIFPKMMT 132


>U23448-8|AAL27226.1|  849|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform b
           protein.
          Length = 849

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 340 QNSYFHQPVPPFRQFSPLRKARTGESSV 257
           QN YF  P P    F P R + T  S +
Sbjct: 162 QNHYFGAPPPGLESFGPTRTSSTSSSQI 189


>U23448-7|AAM81128.1|  868|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform d
           protein.
          Length = 868

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 340 QNSYFHQPVPPFRQFSPLRKARTGESSV 257
           QN YF  P P    F P R + T  S +
Sbjct: 162 QNHYFGAPPPGLESFGPTRTSSTSSSQI 189


>U23448-6|AAL27225.1|  915|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform a
           protein.
          Length = 915

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 340 QNSYFHQPVPPFRQFSPLRKARTGESSV 257
           QN YF  P P    F P R + T  S +
Sbjct: 162 QNHYFGAPPPGLESFGPTRTSSTSSSQI 189


>U23448-5|AAL27227.1|  912|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform c
           protein.
          Length = 912

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 340 QNSYFHQPVPPFRQFSPLRKARTGESSV 257
           QN YF  P P    F P R + T  S +
Sbjct: 161 QNHYFGAPPPGLESFGPTRTSSTSSSQI 188


>AL117202-3|CAB55094.2|  691|Caenorhabditis elegans Hypothetical
           protein Y47D3A.4 protein.
          Length = 691

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 90  ADQTVKDILAVLKVGKFEKD 149
           A  T++D +A  K+GKF+KD
Sbjct: 630 ATMTIRDCIAADKIGKFKKD 649


>AC024852-4|AAT81182.1|  794|Caenorhabditis elegans Conserved
           oligomeric golgi (cog)component protein 3, isoform a
           protein.
          Length = 794

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 392 GLLAGAIYVVLEHVLSVAELVFPPACTTI 306
           GL++GA+  + +    +AEL FPP  T I
Sbjct: 38  GLISGALKDIKKREKDLAELQFPPEITAI 66


>AB212858-1|BAE66673.1|  792|Caenorhabditis elegans COGC-3 protein.
          Length = 792

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 392 GLLAGAIYVVLEHVLSVAELVFPPACTTI 306
           GL++GA+  + +    +AEL FPP  T I
Sbjct: 38  GLISGALKDIKKREKDLAELQFPPEITAI 66


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 213 PPKSVPSVDKRPPPITDDSPV 275
           PP++ PS + R PP T  SP+
Sbjct: 171 PPRTPPSPEPRNPPRTPPSPI 191


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 192 DEDMTSDPPKSVPSVDKRPPPITDDSP 272
           DE+  + PP  V SV + PPP+T   P
Sbjct: 575 DEEFPAPPP--VASVMRMPPPVTPPKP 599


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 192 DEDMTSDPPKSVPSVDKRPPPITDDSP 272
           DE+  + PP  V SV + PPP+T   P
Sbjct: 592 DEEFPAPPP--VASVMRMPPPVTPPKP 616


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 192 DEDMTSDPPKSVPSVDKRPPPITDDSP 272
           DE+  + PP  V SV + PPP+T   P
Sbjct: 704 DEEFPAPPP--VASVMRMPPPVTPPKP 728


>AL132948-3|CAC51073.1|  161|Caenorhabditis elegans Hypothetical
           protein Y39B6A.4 protein.
          Length = 161

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 189 DDEDMTSDPPKSVPSVDKRPPPITDDSPVRAFLNGEN 299
           DDED + D  ++ P     PP +TD+     + N E+
Sbjct: 54  DDEDYSEDEGEAPPPPPPAPPQMTDEEKSIMWQNPEH 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,790,646
Number of Sequences: 27780
Number of extensions: 261946
Number of successful extensions: 886
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)