Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32260
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    24   0.76 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.4  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 135 KFEKDGETHLKFELH 179
           K+EK+GET+L+ + H
Sbjct: 165 KYEKNGETYLRIKKH 179


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 168 ISNGFRRPSQIFRLSKLQVY 109
           I N +R   QI+++  +Q Y
Sbjct: 780 IPNRYREAKQIYKVGNVQAY 799


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 378 AGEKTTVMLGRFDEKAHLDWIKD 446
           A +K    LG+  E+   DW KD
Sbjct: 322 AVQKELTDLGKLGEEEKADWWKD 344


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 378 AGEKTTVMLGRFDEKAHLDWIKD 446
           A +K    LG+  E+   DW KD
Sbjct: 322 AVQKELTDLGKLGEEEKADWWKD 344


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 378 AGEKTTVMLGRFDEKAHLDWIKD 446
           A +K    LG+  E+   DW KD
Sbjct: 322 AVQKELTDLGKLGEEEKADWWKD 344


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 370 MWYWSTCFP*QNSYFH 323
           MW W +C      +FH
Sbjct: 413 MWMWLSCSSFFQQFFH 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,430
Number of Sequences: 438
Number of extensions: 2933
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)