Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32257
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    28   0.50 
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce...    26   1.5  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   2.0  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   2.0  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   2.7  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   2.7  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   3.5  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    25   3.5  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    24   6.2  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    24   6.2  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    24   8.2  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    24   8.2  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    24   8.2  

>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 27.9 bits (59), Expect = 0.50
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = -1

Query: 287 KKIENSKFLGKESDLVHH-HEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIVDLVNVVEK* 111
           K+++NSK +    DL HH +  F GF VC+  ++  + + + D + L   ++ +NVV   
Sbjct: 232 KELQNSKEIAV--DLEHHDYRSFRGF-VCLMQISNREKDWIVDTLELREELEALNVVFTN 288

Query: 110 QNLLLLF 90
            N++ +F
Sbjct: 289 PNIIKVF 295


>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 320 SAMASSPHFFRKKIENSKFLGKE 252
           SA+   P F RKK++NS FL K+
Sbjct: 95  SALHHLPWFKRKKVDNSLFLHKK 117


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 328 LETARWLLPLIFFVKRSRIPNSWGRNPTLYI 236
           LE   WL   ++   R+ I   W RNPTLY+
Sbjct: 179 LENPTWLS--LYLSIRNGICYLWHRNPTLYV 207


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 255 LPQEFGILDLFTKKMRGRSHRAVSSWFYY 341
           LPQE G+  L +K +R  + +    W Y+
Sbjct: 67  LPQERGVFSLSSKSLRLSNRKGTIRWRYH 95


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +2

Query: 215 SLRKFHDDVQGR---IPSPRIWNSRSFYEKNEG 304
           SL    DD+QG    +P+P +  SRS+Y+   G
Sbjct: 136 SLHTTPDDLQGNGVNVPNPSLSASRSWYQSGYG 168


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 260 GKESDLVHHHEIFVGFHVCVAVLAGLDVEVLG 165
           G  S  +HHH++ +  H  +  L G   EV G
Sbjct: 279 GSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCG 309


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 245 GRIPSPRIWNSRSFYEKNEGKKPSRCFKLVLLLPXILN 358
           GRI   R  N +  + +    K  RC K+  +LP +LN
Sbjct: 68  GRIEKKRR-NWKGLFRRQSNWKDGRCKKVESMLPQLLN 104


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 93  KQKKILSLFYNVNEINYE 146
           K+  + SLF NV++IN+E
Sbjct: 60  KKSNVFSLFSNVDDINFE 77


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 173 VLGDFVVLSFIVDLVNVVEK*QNLLLLFDERSVNRCRFEFRYGATESE 30
           V  DF +L     L N V +  NLL   +   +N    E RY   ++E
Sbjct: 708 VKSDFKLLLTGTPLQNNVRELFNLLQFLNPMKINAAELEKRYSIIDTE 755


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 81  AFVEKQKKILSLFYNVNEINYEAEYYKVAQDFNIE 185
           AF++++++I  +   + E+N+  E  +V +  N E
Sbjct: 259 AFIQREERIERIKAEITELNHSLELLRVEKQQNDE 293


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 126 VNEINYEAEYYKVAQDFNIEASKDCYTNMKAYE 224
           V E+N          D + EA K CYT  K +E
Sbjct: 191 VKELNARNAKLLEELDSSEEACKSCYTQAKTWE 223


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 320 SAMASSPHFFRKKIENSKFLGKES 249
           S+++ S   FRKKI  + F+GK+S
Sbjct: 346 SSLSRSCQKFRKKIAFTLFVGKQS 369


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 212 ESLRKFHDDVQGRIPSPRIWNSRSFYEKNEGKKPSRCFKL 331
           E ++K  +    +     IW +    E  E KKPS+  KL
Sbjct: 348 EIIKKEEELEAAKEEEEEIWRNMEQLEDTEDKKPSKRIKL 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,348,091
Number of Sequences: 5004
Number of extensions: 24774
Number of successful extensions: 84
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)