Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32257
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0360 + 9400082-9400524,9406729-9406936                           28   2.5  
01_01_0205 + 1764034-1767601,1767934-1767944                           27   3.4  
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751...    27   5.9  
04_03_0195 + 12525696-12526184                                         27   5.9  
04_01_0212 - 2654691-2656976                                           27   5.9  
01_06_0474 + 29604201-29604527,29604634-29604988,29605071-296054...    27   5.9  
04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179           26   7.7  

>02_02_0360 + 9400082-9400524,9406729-9406936
          Length = 216

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 197 LLHKHESLRKFHDDVQGRIPSPRIWNSRSFYEKNEGKKPS 316
           +L    S  + HD+ Q RI   + W      +K EG+K S
Sbjct: 115 MLRLMHSCMRTHDEFQKRIVKRKAWIRNELEKKGEGEKES 154


>01_01_0205 + 1764034-1767601,1767934-1767944
          Length = 1192

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -1

Query: 359  HSKXLAIIEPA*NSAMAS-SPHFFRKKIENSKFLGKESDLVHHHEIFVGFH 210
            H   L II+ A N+   S  P +F K I   K+      + H H I  GF+
Sbjct: 966  HFPNLQIIDLASNNFTGSLHPQWFEKFISMKKYNNTGETISHRHSISDGFY 1016



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = +3

Query: 75  DAAFVEKQKKILSLFYNVNEINYEAEYYKVAQDFNIEASKDCYTNMKAYENFMMMYKVG 251
           D  F  K  +IL L +N+N + +  +     +   +E +   Y    +  NF M+ ++G
Sbjct: 302 DKFFQLKNLRILDLSFNMNLLGHLPKVPTSLETLRLEGTNFSYAKRISSSNFNMLKELG 360


>06_03_0635 -
           22971502-22973840,22974112-22974403,22974639-22975162,
           22975314-22975583,22976393-22977124,22977226-22977310
          Length = 1413

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -1

Query: 296 FFRKKIENSKFLGKESDLVHHHEIFVGFHVCVAVLAG--LDVEVLGDFVVLSFIVDLVNV 123
           FF K +E+        DL+H   + V  + C+ + +     +++L     LS +VD ++V
Sbjct: 559 FFEKHVEDGSSYYVMHDLLHELALKVSSYECLTICSSNVKSIQILPSIRHLSIVVDDMDV 618

Query: 122 VEK 114
            ++
Sbjct: 619 NDR 621


>04_03_0195 + 12525696-12526184
          Length = 162

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 66  TPVDAAFVEKQKKILSLFYNVNEI-NYEAEYYKVAQDFNIEASKDCYTNMKAYENFMMMY 242
           +P+D    + +  I+      N I N  AEY+KVA+D +  + K     +  +E  M  Y
Sbjct: 98  SPIDVDKKKGKSVIIGDLRPKNRIKNANAEYHKVAKDGSSNSQKTKKPKL-TFEMLMAKY 156

Query: 243 KVG 251
           K G
Sbjct: 157 KKG 159


>04_01_0212 - 2654691-2656976
          Length = 761

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 274 IPNSWGRNPTLYIIMKFS*AFMFV*QSLLASMLKSW 167
           +P +W  N TLY +++   + M+      A+M+ +W
Sbjct: 225 LPKTWDENKTLYKVVEMELSLMYDILYTKAAMVHTW 260


>01_06_0474 +
           29604201-29604527,29604634-29604988,29605071-29605411,
           29606502-29606940,29607558-29607913
          Length = 605

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 197 LLHKHESLRKFHDDVQGRIPSP 262
           L  + +S R F+D+V  RIPSP
Sbjct: 181 LTGRSDSARAFYDEVGARIPSP 202


>04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179
          Length = 380

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 274 IPNSWGRNPTLYIIMKFS*AFMFV*QSLLASMLKSW 167
           +P +W  N TLY +++   + M+      A+M+ +W
Sbjct: 60  LPKTWDENRTLYKVVEMELSLMYDILYTKAAMVHTW 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,251,312
Number of Sequences: 37544
Number of extensions: 144439
Number of successful extensions: 408
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)