Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32257
         (359 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48553| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20)                28   2.6  
SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)                       26   8.0  
SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)                26   8.0  

>SB_48553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 323 NSAMASSPHFFRKKIENSKFLGKESDLVHHH 231
           +SA  SSP   R     S   GK S  +HHH
Sbjct: 101 SSAATSSPKSERSSAATSSSTGKRSSQLHHH 131


>SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20)
          Length = 470

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 269 WNSRSFYEKNEGKKPS 316
           WNS++F+EK +GK P+
Sbjct: 405 WNSKTFHEKCDGKAPN 420


>SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1230

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 39  SSTVPEFKTTPVDAAFVEKQKKILSLFYNVN 131
           +ST+P  K      A +E+++ IL L YN N
Sbjct: 63  TSTIPTIKIIKKAKALLERKQNILILVYNQN 93


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 75  DAAFVEKQKKILSLFYNVNEINYEAEYYK 161
           +AA  EK+K++  L   V E+N + +Y K
Sbjct: 291 EAALKEKEKELQQLKNQVEELNMQLQYQK 319


>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
          Length = 2996

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +3

Query: 99   KKILSLFYNVNEIN--YEAEYYKV-AQDFNIEASKDCYTNMKAYENFMMMYKVGF 254
            KK   +  N N +   Y ++++ V  + F  E  +DCYTN      F  + +  F
Sbjct: 958  KKTAEIDANGNPVYRYYNSKFFPVDGKGFGAEGQRDCYTNALRNYGFTTVVRSAF 1012


>SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 670

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 176 QHRGQQGLLHKHESLRKFHDDVQGRIPS 259
           Q  G  G + + E + K   D+QG++PS
Sbjct: 208 QTAGDSGGISREEFITKIASDIQGKLPS 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,621,009
Number of Sequences: 59808
Number of extensions: 170134
Number of successful extensions: 435
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)