Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32256
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   6.7  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   6.7  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   6.7  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    25   8.9  

>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 398 QKARLPKWFGERP 360
           QK RLP+W G+ P
Sbjct: 84  QKDRLPRWIGDNP 96


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 118 SYSFVTNPLTYCYYNMNKI 62
           SY+ V    +YCY+++NK+
Sbjct: 183 SYNVVNGWYSYCYHSLNKL 201


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 419 PSLATPSRGSPCSVSLXHPRTVSFCRRRIVCR 514
           PS+++    S  S+SL +   +SFC+ +  CR
Sbjct: 328 PSVSSSLSSSVASLSLQNSNILSFCKDQHGCR 359


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -2

Query: 497 DDKKKLFEGDXEKLNKDFLEKVWQERAEQFGGRQKARLPKWFGE 366
           ++KK LFE    +  KD ++    E AE     +    P+ F +
Sbjct: 49  EEKKSLFENSDSENEKDLIDADEFEEAETLSDLEHDEEPQTFAD 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,199,263
Number of Sequences: 5004
Number of extensions: 15788
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)