BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV32256 (516 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 25 6.7 SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 25 6.7 SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 6.7 SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 25 8.9 >SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|Schizosaccharomyces pombe|chr 2|||Manual Length = 287 Score = 25.0 bits (52), Expect = 6.7 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = -2 Query: 398 QKARLPKWFGERP 360 QK RLP+W G+ P Sbjct: 84 QKDRLPRWIGDNP 96 >SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 472 Score = 25.0 bits (52), Expect = 6.7 Identities = 8/19 (42%), Positives = 14/19 (73%) Frame = -3 Query: 118 SYSFVTNPLTYCYYNMNKI 62 SY+ V +YCY+++NK+ Sbjct: 183 SYNVVNGWYSYCYHSLNKL 201 >SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 681 Score = 25.0 bits (52), Expect = 6.7 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +2 Query: 419 PSLATPSRGSPCSVSLXHPRTVSFCRRRIVCR 514 PS+++ S S+SL + +SFC+ + CR Sbjct: 328 PSVSSSLSSSVASLSLQNSNILSFCKDQHGCR 359 >SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 608 Score = 24.6 bits (51), Expect = 8.9 Identities = 12/44 (27%), Positives = 20/44 (45%) Frame = -2 Query: 497 DDKKKLFEGDXEKLNKDFLEKVWQERAEQFGGRQKARLPKWFGE 366 ++KK LFE + KD ++ E AE + P+ F + Sbjct: 49 EEKKSLFENSDSENEKDLIDADEFEEAETLSDLEHDEEPQTFAD 92 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,199,263 Number of Sequences: 5004 Number of extensions: 15788 Number of successful extensions: 53 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 53 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 208287218 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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