Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32255
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   1.6  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   6.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.6  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 416 CATNKQNSSASPTNSTRPANRKTP 487
           C+T  +NS   P    + AN K P
Sbjct: 434 CSTPTENSPTKPYYKLKTANNKRP 457


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
          transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +3

Query: 12 FGIRSRPTGRGVRSSS---GPRTSA 77
          FG R R TGRG++ S    GP++ +
Sbjct: 8  FGKRGRSTGRGLKYSGQQHGPQSDS 32


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +3

Query: 420 QQTNRTPARLPR-TRQDPRTE-RRPRP 494
           ++TN  P   PR T    R E +RPRP
Sbjct: 308 EKTNIAPRERPRATDHQRRNEPKRPRP 334


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 446 SPTNSTRPANRKTPSP 493
           SPT      N K+PSP
Sbjct: 684 SPTRDKSKQNEKSPSP 699


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 434 NSSASPTNSTRPANRKTPS 490
           N+ +  TNST    RK+PS
Sbjct: 50  NAISQITNSTLDPGRKSPS 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.309    0.126    0.320 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,538
Number of Sequences: 336
Number of extensions: 1477
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.2 bits)