Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32254
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    24   4.2  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    24   5.5  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    23   9.6  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    23   9.6  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    23   9.6  

>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = +3

Query: 177 SLVP*SL----CFLQ*SLILGNFTKPIHPTRAKNFN 272
           SL+P S+    CFL  SL  G + KP+ P   K  N
Sbjct: 66  SLLPESIEARKCFLIESLKSGKYLKPVDPNAPKAAN 101


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 253 VGWMGLVKLPSIKDYWRKHKLYGTRLH*KYREWNISTV 140
           V   GL  +   KDYW  + LY T     Y   ++STV
Sbjct: 435 VSGYGLGDVGDEKDYWIVNILYDTAHRDAYNVRSLSTV 472


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 204 ENTNSMVLGCTKSIGNGIFPL 142
           E TN    GC ++IGN +F L
Sbjct: 40  EETNVGSSGCDRTIGNLLFTL 60


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 84  PFIYLKKDSRSLSRGFVK 31
           PF+Y+K+D ++L + + K
Sbjct: 465 PFVYIKEDDQALEKIYKK 482


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 262 LALVGWMGLVKLPSI 218
           L+L+ W+G + +PSI
Sbjct: 557 LSLLSWLGCITMPSI 571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,295,792
Number of Sequences: 5004
Number of extensions: 25193
Number of successful extensions: 42
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)