BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV32254 (300 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ... 24 4.2 SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 24 5.5 SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 23 9.6 SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 23 9.6 SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 23 9.6 >SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 258 Score = 24.2 bits (50), Expect = 4.2 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%) Frame = +3 Query: 177 SLVP*SL----CFLQ*SLILGNFTKPIHPTRAKNFN 272 SL+P S+ CFL SL G + KP+ P K N Sbjct: 66 SLLPESIEARKCFLIESLKSGKYLKPVDPNAPKAAN 101 >SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizosaccharomyces pombe|chr 1|||Manual Length = 739 Score = 23.8 bits (49), Expect = 5.5 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = -3 Query: 253 VGWMGLVKLPSIKDYWRKHKLYGTRLH*KYREWNISTV 140 V GL + KDYW + LY T Y ++STV Sbjct: 435 VSGYGLGDVGDEKDYWIVNILYDTAHRDAYNVRSLSTV 472 >SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces pombe|chr 2|||Manual Length = 811 Score = 23.0 bits (47), Expect = 9.6 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -1 Query: 204 ENTNSMVLGCTKSIGNGIFPL 142 E TN GC ++IGN +F L Sbjct: 40 EETNVGSSGCDRTIGNLLFTL 60 >SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1|||Manual Length = 654 Score = 23.0 bits (47), Expect = 9.6 Identities = 7/18 (38%), Positives = 14/18 (77%) Frame = -1 Query: 84 PFIYLKKDSRSLSRGFVK 31 PF+Y+K+D ++L + + K Sbjct: 465 PFVYIKEDDQALEKIYKK 482 >SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 668 Score = 23.0 bits (47), Expect = 9.6 Identities = 7/15 (46%), Positives = 12/15 (80%) Frame = -3 Query: 262 LALVGWMGLVKLPSI 218 L+L+ W+G + +PSI Sbjct: 557 LSLLSWLGCITMPSI 571 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,295,792 Number of Sequences: 5004 Number of extensions: 25193 Number of successful extensions: 42 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 42 length of database: 2,362,478 effective HSP length: 63 effective length of database: 2,047,226 effective search space used: 73700136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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