Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32254
         (300 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141...    27   3.6  
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356...    26   4.7  
09_06_0251 - 21859484-21862162                                         25   8.3  

>11_01_0179 -
           1412391-1412863,1412947-1413412,1413504-1414551,
           1414639-1414725,1416244-1416411,1416785-1416958,
           1417662-1417720,1418132-1420154,1420549-1420647,
           1420998-1421796,1422101-1422120,1422446-1422513
          Length = 1827

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 280 DDMLKFLALVGWMGLVKLPSIKDYWRKHKL 191
           D+ +K +++VG+ GL K    K  + KHKL
Sbjct: 213 DEKMKIVSIVGFGGLGKTTLSKAVYDKHKL 242


>01_01_0484 -
           3558941-3559303,3559439-3559560,3560596-3560743,
           3560853-3561491,3562154-3562450,3562553-3563407,
           3564363-3564545,3565041-3565118,3565762-3565974,
           3566075-3566238,3566357-3566445,3566761-3566891,
           3566980-3567148,3567255-3567327,3567525-3567606,
           3567677-3567808,3568743-3568818,3568965-3569065,
           3569446-3569636,3569738-3569912,3570604-3570854,
           3571327-3571603,3572184-3572267,3572496-3573206
          Length = 1867

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 143 CSCHIKIFLIENSLVLKI*YHLFI*KKILGPCH 45
           CS H + F+   S+VL +  HLF+ +K LG C+
Sbjct: 285 CSLHHQ-FMGNTSVVLGLSKHLFLAQKDLGLCY 316


>09_06_0251 - 21859484-21862162
          Length = 892

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 274 MLKFLALVGWMGLVKLPSIKDYW 206
           ML   A VGW+G   +  +K YW
Sbjct: 546 MLNSYAYVGWVGNDGVGRVKSYW 568


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,561,659
Number of Sequences: 37544
Number of extensions: 135081
Number of successful extensions: 249
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)