Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32254
(300 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30693| Best HMM Match : Protamine_P1 (HMM E-Value=6.3) 40 5e-04
SB_51842| Best HMM Match : YTH (HMM E-Value=1.8) 37 0.003
SB_52495| Best HMM Match : AT_hook (HMM E-Value=4.6) 36 0.005
SB_31608| Best HMM Match : DUF298 (HMM E-Value=3.9) 36 0.005
SB_51752| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.005
SB_11956| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.011
SB_26234| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.011
SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.025
SB_43915| Best HMM Match : Bombesin (HMM E-Value=4.9) 32 0.099
SB_11041| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.17
SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.30
SB_42189| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.30
SB_25778| Best HMM Match : COX17 (HMM E-Value=1.1) 30 0.30
SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11) 30 0.30
SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.30
SB_21408| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.30
SB_46931| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.40
SB_59640| Best HMM Match : RasGEF (HMM E-Value=0.23) 30 0.40
SB_5599| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.70
SB_1285| Best HMM Match : SET (HMM E-Value=0.011) 29 0.70
SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.70
SB_50051| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.92
SB_19874| Best HMM Match : CBM_X (HMM E-Value=2.2) 28 1.2
SB_7401| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_54913| Best HMM Match : Acyltransferase (HMM E-Value=4.2) 27 3.7
SB_5202| Best HMM Match : Acyltransferase (HMM E-Value=3.5e-13) 27 3.7
SB_22454| Best HMM Match : Ribosomal_L35p (HMM E-Value=4.5) 26 4.9
SB_7524| Best HMM Match : V-ATPase_G (HMM E-Value=3.2) 26 4.9
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 26 6.5
>SB_30693| Best HMM Match : Protamine_P1 (HMM E-Value=6.3)
Length = 250
Score = 39.5 bits (88), Expect = 5e-04
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -3
Query: 298 WTPVXRDDMLKFLALVGWMGLVKLPSIKDYWRK 200
W P+ +D+M F L MG+VKLP K YW+K
Sbjct: 153 WKPITQDEMKAFFGLNIAMGIVKLPEAKMYWQK 185
>SB_51842| Best HMM Match : YTH (HMM E-Value=1.8)
Length = 244
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -3
Query: 292 PVXRDDMLKFLALVGWMGLVKLPSIKDYW 206
P+ +++ FL + MG+VKLPS+KDYW
Sbjct: 130 PLTVEELKAFLGITIMMGIVKLPSMKDYW 158
>SB_52495| Best HMM Match : AT_hook (HMM E-Value=4.6)
Length = 183
Score = 36.3 bits (80), Expect = 0.005
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = -3
Query: 280 DDMLKFLALVGWMGLVKLPSIKDYW 206
+++ FL +V MG+VKLPS++DYW
Sbjct: 41 EELRAFLGIVIMMGIVKLPSVRDYW 65
>SB_31608| Best HMM Match : DUF298 (HMM E-Value=3.9)
Length = 203
Score = 36.3 bits (80), Expect = 0.005
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = -3
Query: 280 DDMLKFLALVGWMGLVKLPSIKDYW 206
+++ FL +V MG+VKLPS++DYW
Sbjct: 61 EELRAFLGIVIMMGIVKLPSVRDYW 85
>SB_51752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 36.3 bits (80), Expect = 0.005
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = -3
Query: 280 DDMLKFLALVGWMGLVKLPSIKDYW 206
+++ FL +V MG+VKLPS++DYW
Sbjct: 41 EELRAFLGIVIMMGIVKLPSVRDYW 65
>SB_11956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 832
Score = 35.1 bits (77), Expect = 0.011
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = -3
Query: 265 FLALVGWMGLVKLPSIKDYW 206
FL +V MG+VKLPS++DYW
Sbjct: 411 FLGIVIMMGIVKLPSVRDYW 430
>SB_26234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 368
Score = 35.1 bits (77), Expect = 0.011
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -3
Query: 292 PVXRDDMLKFLALVGWMGLVKLPSIKDYW 206
P+ +++ FL + MG+VKLPS KDYW
Sbjct: 124 PLTVEELKTFLGITIMMGIVKLPSKKDYW 152
>SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 33.9 bits (74), Expect = 0.025
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = -3
Query: 280 DDMLKFLALVGWMGLVKLPSIKDYW-RKHK 194
+++ FL++ MG+VK PS+KDYW KH+
Sbjct: 144 EELKAFLSITIMMGIVKPPSMKDYWSEKHQ 173
>SB_43915| Best HMM Match : Bombesin (HMM E-Value=4.9)
Length = 485
Score = 31.9 bits (69), Expect = 0.099
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 298 WTPVXRDDMLKFLALVGWMGLVKLPSIKDYWRKHKLYGTR 179
W PV D+ +LA+ G+ +PS +DYW G +
Sbjct: 314 WEPVNASDIKIYLAIRLLQGIKSVPSERDYWATSPFLGVK 353
>SB_11041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 31.1 bits (67), Expect = 0.17
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 280 DDMLKFLALVGWMGLVKLPSIKDYWRKHKLYG 185
++M FL L G+ KLPS++ YW K+ L G
Sbjct: 48 EEMKAFLGLHIVFGIKKLPSVQLYWSKNPLLG 79
>SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 30.3 bits (65), Expect = 0.30
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 298 WTPVXRDDMLKFLALVGWMGLVKLPSIKDYWRKHKLYG 185
W V D++ FL + MG+ LP YW ++ L+G
Sbjct: 132 WKDVTPDELRMFLGVALVMGINSLPQQALYWSQNPLFG 169
>SB_42189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 30.3 bits (65), Expect = 0.30
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 298 WTPVXRDDMLKFLALVGWMGLVKLPSIKDYWRKHKLYG 185
W V D++ FL + MG+ LP YW ++ L+G
Sbjct: 170 WKDVTPDELRMFLGVALVMGINSLPQQALYWSQNPLFG 207
>SB_25778| Best HMM Match : COX17 (HMM E-Value=1.1)
Length = 567
Score = 30.3 bits (65), Expect = 0.30
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 298 WTPVXRDDMLKFLALVGWMGLVKLPSIKDYWRKHKLYG 185
W V D++ FL + MG+ LP YW ++ L+G
Sbjct: 132 WKDVTPDELRMFLGVALVMGINSLPQQALYWSQNPLFG 169
>SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11)
Length = 1170
Score = 30.3 bits (65), Expect = 0.30
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 298 WTPVXRDDMLKFLALVGWMGLVKLPSIKDYWRKHKLYG 185
W V D++ FL + MG+ LP YW ++ L+G
Sbjct: 35 WKDVTPDELRMFLGVALVMGINSLPQQALYWSQNPLFG 72
>SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 30.3 bits (65), Expect = 0.30
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 298 WTPVXRDDMLKFLALVGWMGLVKLPSIKDYWRKHKLYG 185
W V D++ FL + MG+ LP YW ++ L+G
Sbjct: 1914 WKDVTPDELRMFLGVALVMGINSLPQQALYWSQNPLFG 1951
>SB_21408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 30.3 bits (65), Expect = 0.30
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 298 WTPVXRDDMLKFLALVGWMGLVKLPSIKDYWRKHKLYG 185
W V D++ FL + MG+ LP YW ++ L+G
Sbjct: 95 WKDVTPDELRMFLGVALVMGINSLPQQALYWSQNPLFG 132
>SB_46931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 29.9 bits (64), Expect = 0.40
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 298 WTPVXRDDMLKFLALVGWMGLVKLPSIKDYWRKHKLYG 185
W V D++ FL + MG+ LP YW ++ L+G
Sbjct: 11 WKDVTPDELHMFLGVALVMGINSLPQQALYWSQNALFG 48
>SB_59640| Best HMM Match : RasGEF (HMM E-Value=0.23)
Length = 299
Score = 29.9 bits (64), Expect = 0.40
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 298 WTPVXRDDMLKFLALVGWMGLVKLPSIKDYWRKHKLYG 185
W V D++ FL + MG+ LP YW ++ L+G
Sbjct: 124 WKDVTPDELHMFLGVALVMGINSLPQQALYWSQNALFG 161
>SB_5599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.1 bits (62), Expect = 0.70
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 298 WTPVXRDDMLKFLALVGWMGLVKLPSIKDYWRKHKLY 188
W +++ + +AL+ + GLV + S YW LY
Sbjct: 53 WNDTNPEEINRLIALILYCGLVNVSSFHRYWNTKTLY 89
>SB_1285| Best HMM Match : SET (HMM E-Value=0.011)
Length = 829
Score = 29.1 bits (62), Expect = 0.70
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 298 WTPVXRDDMLKFLALVGWMGLVKLPSIKDYWRKHKLY 188
W +++ + +AL+ + GLV + S YW LY
Sbjct: 206 WNDTNPEEINRLIALILYCGLVNVSSFHRYWNTKTLY 242
>SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 29.1 bits (62), Expect = 0.70
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 298 WTPVXRDDMLKFLALVGWMGLVKLPSIKDYWRKHKLY 188
W +++ + +AL+ + GLV + S YW LY
Sbjct: 206 WNDTNPEEINRLIALILYCGLVNVSSFHRYWNTKTLY 242
>SB_50051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 28.7 bits (61), Expect = 0.92
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 298 WTPVXRDDMLKFLALVGWMGLVKLPSIKDYWRKHKLYG 185
W V D++ FL + +G+ LP YW ++ L+G
Sbjct: 132 WKDVTPDELRMFLGVALVIGINSLPQQALYWSQNPLFG 169
>SB_19874| Best HMM Match : CBM_X (HMM E-Value=2.2)
Length = 725
Score = 28.3 bits (60), Expect = 1.2
Identities = 8/40 (20%), Positives = 20/40 (50%)
Frame = -3
Query: 298 WTPVXRDDMLKFLALVGWMGLVKLPSIKDYWRKHKLYGTR 179
W +D++ + + G++ +PS + YW K++ +
Sbjct: 132 WYATTKDELCAYFGIRFLQGIISVPSERHYWSKNEFLSVK 171
>SB_7401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 403
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 91 SNTIYLFKKRFSVLVTRFCQT 29
+NT+Y K R +VL+ + CQT
Sbjct: 40 TNTLYFKKSRLNVLLVKKCQT 60
>SB_54913| Best HMM Match : Acyltransferase (HMM E-Value=4.2)
Length = 279
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 198 CFLQ*SLILGNFTKPIHPTRAKNFNISSLXTGV 296
CF + +ILG+F + IH K + IS + T V
Sbjct: 124 CFTEKDIILGDFPREIH-FHIKRYPISEIPTDV 155
>SB_5202| Best HMM Match : Acyltransferase (HMM E-Value=3.5e-13)
Length = 326
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 198 CFLQ*SLILGNFTKPIHPTRAKNFNISSLXTGV 296
CF + +ILG+F + IH K + IS + T V
Sbjct: 171 CFTEKDIILGDFPREIH-FHIKRYPISEIPTDV 202
>SB_22454| Best HMM Match : Ribosomal_L35p (HMM E-Value=4.5)
Length = 214
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 218 QRLLEKTQTLWY*AALKVSGMEY 150
QRL+EKT+ +Y AL SG Y
Sbjct: 23 QRLIEKTEHFFYQKALDESGYNY 45
>SB_7524| Best HMM Match : V-ATPase_G (HMM E-Value=3.2)
Length = 492
Score = 26.2 bits (55), Expect = 4.9
Identities = 8/40 (20%), Positives = 19/40 (47%)
Frame = -3
Query: 298 WTPVXRDDMLKFLALVGWMGLVKLPSIKDYWRKHKLYGTR 179
W +D++ + + G+ +PS + YW K++ +
Sbjct: 320 WYATTKDELCAYFGIRFLQGIKSVPSERHYWSKNEFLSVK 359
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 184 TRLH*KYREWNISTVPVILKSF*LKTPWF*KSNTIYLFKKRFS 56
TRLH W + VILKSF L PW ++ ++ + FS
Sbjct: 107 TRLH-VCAIWRQTARVVILKSFTLALPWRPEAPRVFQANRDFS 148
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,885,440
Number of Sequences: 59808
Number of extensions: 158624
Number of successful extensions: 248
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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