BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV32254 (300 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC006673-13|AAF39922.1| 295|Caenorhabditis elegans Hypothetical... 27 2.5 U80840-8|AAB37927.1| 235|Caenorhabditis elegans Hypothetical pr... 27 3.3 AF106592-5|AAK21368.1| 525|Caenorhabditis elegans Hypothetical ... 27 3.3 Z71262-10|CAA95816.4| 436|Caenorhabditis elegans Hypothetical p... 26 4.4 AY037801-1|AAK94766.1| 436|Caenorhabditis elegans GLY-19 protein. 26 4.4 AY037799-1|AAK94764.1| 352|Caenorhabditis elegans GLY-19 protein. 26 4.4 >AC006673-13|AAF39922.1| 295|Caenorhabditis elegans Hypothetical protein K09D9.1 protein. Length = 295 Score = 27.1 bits (57), Expect = 2.5 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -2 Query: 149 FHCSCHIKIFLIENSLVLKI*YHL 78 F+ CH+K+ IE +LVL YH+ Sbjct: 22 FNAGCHMKMRYIETNLVLLKTYHM 45 >U80840-8|AAB37927.1| 235|Caenorhabditis elegans Hypothetical protein F08D12.4 protein. Length = 235 Score = 26.6 bits (56), Expect = 3.3 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = -1 Query: 240 VW*NYQVSKITGENTNSMVLGCTKSIGN 157 VW Y+VS+IT N+N+ + +S+ N Sbjct: 27 VWEGYEVSEITPGNSNTSYITWKRSVPN 54 >AF106592-5|AAK21368.1| 525|Caenorhabditis elegans Hypothetical protein D1037.5 protein. Length = 525 Score = 26.6 bits (56), Expect = 3.3 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -1 Query: 204 ENTNSMVLGCTKSIGNGIFP 145 EN + +GC S+G G+FP Sbjct: 378 ENRGNWKIGCVISLGTGVFP 397 >Z71262-10|CAA95816.4| 436|Caenorhabditis elegans Hypothetical protein F22D6.12 protein. Length = 436 Score = 26.2 bits (55), Expect = 4.4 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 231 NYQVSKITGENTNSMVLGCTKSIGNGIFP 145 NYQ +++TG+N N L KS + I P Sbjct: 238 NYQQARLTGKNENESPLPLFKSSLSAIIP 266 >AY037801-1|AAK94766.1| 436|Caenorhabditis elegans GLY-19 protein. Length = 436 Score = 26.2 bits (55), Expect = 4.4 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 231 NYQVSKITGENTNSMVLGCTKSIGNGIFP 145 NYQ +++TG+N N L KS + I P Sbjct: 238 NYQQARLTGKNENESPLPLFKSSLSAIIP 266 >AY037799-1|AAK94764.1| 352|Caenorhabditis elegans GLY-19 protein. Length = 352 Score = 26.2 bits (55), Expect = 4.4 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 231 NYQVSKITGENTNSMVLGCTKSIGNGIFP 145 NYQ +++TG+N N L KS + I P Sbjct: 154 NYQQARLTGKNENESPLPLFKSSLSAIIP 182 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,883,691 Number of Sequences: 27780 Number of extensions: 130939 Number of successful extensions: 254 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 250 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 254 length of database: 12,740,198 effective HSP length: 70 effective length of database: 10,795,598 effective search space used: 313072342 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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