Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32254
         (300 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006673-13|AAF39922.1|  295|Caenorhabditis elegans Hypothetical...    27   2.5  
U80840-8|AAB37927.1|  235|Caenorhabditis elegans Hypothetical pr...    27   3.3  
AF106592-5|AAK21368.1|  525|Caenorhabditis elegans Hypothetical ...    27   3.3  
Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical p...    26   4.4  
AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.     26   4.4  
AY037799-1|AAK94764.1|  352|Caenorhabditis elegans GLY-19 protein.     26   4.4  

>AC006673-13|AAF39922.1|  295|Caenorhabditis elegans Hypothetical
           protein K09D9.1 protein.
          Length = 295

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 149 FHCSCHIKIFLIENSLVLKI*YHL 78
           F+  CH+K+  IE +LVL   YH+
Sbjct: 22  FNAGCHMKMRYIETNLVLLKTYHM 45


>U80840-8|AAB37927.1|  235|Caenorhabditis elegans Hypothetical
           protein F08D12.4 protein.
          Length = 235

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 240 VW*NYQVSKITGENTNSMVLGCTKSIGN 157
           VW  Y+VS+IT  N+N+  +   +S+ N
Sbjct: 27  VWEGYEVSEITPGNSNTSYITWKRSVPN 54


>AF106592-5|AAK21368.1|  525|Caenorhabditis elegans Hypothetical
           protein D1037.5 protein.
          Length = 525

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 204 ENTNSMVLGCTKSIGNGIFP 145
           EN  +  +GC  S+G G+FP
Sbjct: 378 ENRGNWKIGCVISLGTGVFP 397


>Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical
           protein F22D6.12 protein.
          Length = 436

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 231 NYQVSKITGENTNSMVLGCTKSIGNGIFP 145
           NYQ +++TG+N N   L   KS  + I P
Sbjct: 238 NYQQARLTGKNENESPLPLFKSSLSAIIP 266


>AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.
          Length = 436

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 231 NYQVSKITGENTNSMVLGCTKSIGNGIFP 145
           NYQ +++TG+N N   L   KS  + I P
Sbjct: 238 NYQQARLTGKNENESPLPLFKSSLSAIIP 266


>AY037799-1|AAK94764.1|  352|Caenorhabditis elegans GLY-19 protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 231 NYQVSKITGENTNSMVLGCTKSIGNGIFP 145
           NYQ +++TG+N N   L   KS  + I P
Sbjct: 154 NYQQARLTGKNENESPLPLFKSSLSAIIP 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,883,691
Number of Sequences: 27780
Number of extensions: 130939
Number of successful extensions: 254
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)