Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32252
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 137 4e-33
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 40 0.002
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 4.0
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_23424| Best HMM Match : Ank (HMM E-Value=1.1e-16) 27 6.9
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_23894| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_2365| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 137 bits (332), Expect = 4e-33
Identities = 65/125 (52%), Positives = 80/125 (64%)
Frame = +1
Query: 142 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 321
NPL EKRP+NF IG IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD
Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88
Query: 322 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 501
+ + LFK+L KYRPET +P ++ G N +T LVE
Sbjct: 89 RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 148
Query: 502 KKKAQ 516
KKAQ
Sbjct: 149 NKKAQ 153
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/59 (35%), Positives = 26/59 (44%)
Frame = +1
Query: 340 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQ 516
LFK+L KYRPET +P ++ G N +T LVE KKAQ
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQ 62
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 453 PLWWRLIFLGNLSFSSFPQPLFPG 382
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 264 TSASSESAPSDQPIYPDTG 320
T+ASSE+APS P PD G
Sbjct: 43 TAASSEAAPSSAPSMPDYG 61
>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 832
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 211 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 360
SR RW Y R+ KA+LQR ++ I Q T + K +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557
>SB_23424| Best HMM Match : Ank (HMM E-Value=1.1e-16)
Length = 494
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 434 MSLHQRGPIPSDPAQTQSPSWSRRRRR 514
MSL G +PS+PA+ + P S R R+
Sbjct: 212 MSLPFSGTLPSEPARVEQPPSSARSRK 238
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 258 GCTSASSESAPSDQPIYPDTGQDYS 332
GC ++ PS+ P YP T + YS
Sbjct: 1229 GCRPSNDRVKPSEMPHYPKTTEKYS 1253
>SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -1
Query: 360 FLQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSL 256
F+QNL L CS ++ G+LV+++ QTTL +L
Sbjct: 28 FIQNLSLFL-CSFLKEHGQLVEKKVDLQTTLLEAL 61
>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 135 DRESSLREEAKELCHWSGHSANS*LVQ-ICKMAQVYPHPAPEGCTSASSESAPSDQPI 305
DR ++ E KE+C+W GH + + + + + + T+++SE S +P+
Sbjct: 137 DRRKNMEERHKEMCYW-GHKFETYVTKLVSERGKRETVMGASTSTASTSEGGASAKPV 193
>SB_23894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 187 PDQWQSSLASSRREDSRS 134
PDQW+S LAS DS S
Sbjct: 1 PDQWESYLASKSESDSSS 18
>SB_2365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 187 PDQWQSSLASSRREDSRS 134
PDQW+S LAS DS S
Sbjct: 1 PDQWESYLASKSESDSSS 18
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,056,930
Number of Sequences: 59808
Number of extensions: 257856
Number of successful extensions: 789
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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