Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32247
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    86   2e-18
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    75   5e-15
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    36   0.004
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    31   0.081
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    31   0.11 
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   0.99 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   7.0  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   7.0  

>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 86.2 bits (204), Expect = 2e-18
 Identities = 38/62 (61%), Positives = 50/62 (80%)
 Frame = +2

Query: 257 PSHIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEXGYLAKI 436
           P+H  +N+PALSPTM +G+I +++KK GDK+  GD+LCEIETDKA + FE  + GYLAKI
Sbjct: 51  PAHTVINMPALSPTMTTGNIGAFQKKIGDKIEPGDVLCEIETDKAQIDFEQQDEGYLAKI 110

Query: 437 LI 442
           LI
Sbjct: 111 LI 112


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 74.9 bits (176), Expect = 5e-15
 Identities = 33/55 (60%), Positives = 39/55 (70%)
 Frame = +2

Query: 278 LPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEXGYLAKILI 442
           +PALSPTME G+I  W  KEGD    GD+L E+ETDKATM  E  + G LAK+LI
Sbjct: 40  MPALSPTMEEGNITKWHFKEGDSFKSGDILLEVETDKATMDVEVQDNGILAKVLI 94


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = +2

Query: 269 KVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEXGYLAKILI 442
           ++  P    ++  G++  W K+ G+ +++ + +  +ETDK       P+ G L + L+
Sbjct: 44  RIKTPPFPESITEGTLAQWLKQPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQLV 101


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1185

 Score = 31.1 bits (67), Expect = 0.081
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 305  SGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEXGYLAKILI 442
            SG+IV    KEG K+ +GD++  +   K  +    P  G L  + +
Sbjct: 1122 SGTIVEIRVKEGAKVKKGDIIAVLSAMKMEIVISAPHSGVLKSLAV 1167


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +2

Query: 182 LEHAQNQTVLSTPQWTVXMRYYSSLPSHIKVNLPALSPTMESGSIVSWEKKEGDKLSE 355
           L   Q Q +++ P W     YY  +P H  + L     T+   S   WE++ G++ ++
Sbjct: 257 LRFTQRQILMNDPYWNRGF-YYDGVPPHTGMKLAREVATISYRSGPEWEQRFGNRRAD 313


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 197 NQTVLSTPQWTVXMRYYSSLPSHIKVNLPALSPTMESGSIVSWEKKE 337
           N +  +TP W V     S+L +  + + PAL P+      V   KK+
Sbjct: 646 NSSAANTPSWGVRKARASALNARSEEDFPALPPSTSKRISVQLGKKQ 692


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 227 TVXMRYYSSLPSHIKVNLP 283
           T+ + YY ++P HI+ N P
Sbjct: 468 TLGIEYYGNIPVHIQENAP 486


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 170 TNKLLEHAQNQTVLSTPQWTVXMRYYSSLPSHIKVNLPALSP-TMESGSIVS 322
           +NK L HAQ   + S P      + + S PS     + +++P T+E+G++ S
Sbjct: 178 SNKSLPHAQQSIIRSFPDIQKQPKGFFSYPSS---TVSSIAPSTLEAGNLHS 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,335
Number of Sequences: 5004
Number of extensions: 32712
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)