Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32247
(446 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 4e-25
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 73 8e-14
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 5e-04
SB_54467| Best HMM Match : GLTT (HMM E-Value=0.52) 32 0.25
SB_1505| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059) 27 5.3
SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_22536| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_17434| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_52201| Best HMM Match : DUF1557 (HMM E-Value=7.1) 27 7.1
SB_56564| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 110 bits (265), Expect = 4e-25
Identities = 52/71 (73%), Positives = 62/71 (87%), Gaps = 2/71 (2%)
Frame = +2
Query: 239 RYYSS--LPSHIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETP 412
R YSS P+H KV LPALSPTME+G++VSWEK+EGD+L+EGDLL +IETDKATM FETP
Sbjct: 59 RLYSSDGYPTHTKVPLPALSPTMEAGTLVSWEKQEGDELAEGDLLAQIETDKATMEFETP 118
Query: 413 EXGYLAKILIP 445
E G++AKILIP
Sbjct: 119 EEGFIAKILIP 129
>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 382
Score = 73.3 bits (172), Expect = 8e-14
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = +2
Query: 299 MESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEXGYLAKILIP 445
ME+G+IVSW KKEGD + GD LCEIETDKAT+ +T E G LAKI+IP
Sbjct: 1 METGTIVSWLKKEGDTIEPGDALCEIETDKATLTLDTDEQGVLAKIVIP 49
>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 40.7 bits (91), Expect = 5e-04
Identities = 17/60 (28%), Positives = 35/60 (58%)
Frame = +2
Query: 263 HIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEXGYLAKILI 442
++ VN P + ++ G I W++ GD ++E +++ EIETDK ++ P G + ++ +
Sbjct: 47 YVVVNTPPFAESVTEGDI-RWDQAVGDAVAEDEVVGEIETDKTSIPVTAPANGVIEELFV 105
>SB_54467| Best HMM Match : GLTT (HMM E-Value=0.52)
Length = 353
Score = 31.9 bits (69), Expect = 0.25
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 217 TTMDCXDEVLFXSTITYKGQPSSSFANHG-EW 309
TTMDC D L ST+ Y G P S A+HG +W
Sbjct: 214 TTMDCHDFPL--STMAYHGLPYYSMASHGSQW 243
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 220 TMDCXDEVLFXSTITYKGQPSSSFANHG 303
TMDC D L +T+ Y G P S A+HG
Sbjct: 321 TMDCHDLPL--TTMAYHGLPHYSMASHG 346
>SB_1505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = +2
Query: 131 TRCISTELAKRKXTNKLLEHAQNQTVLSTPQWTVXMRYYSSLPSHIKVNLPALSPTMESG 310
T C+ + L + T L + +++S+PQ ++ H KV+ LS +
Sbjct: 13 TDCVESPLPGKSPTETLFSSSPFLSLMSSPQLKTKQHQFTMNKLHQKVSKLQLSLDAQMH 72
Query: 311 SIVSWEKKEGDKLSEGDL 364
+ E++ DK E D+
Sbjct: 73 MQATLEEELADKCKEIDV 90
>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
Length = 765
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 275 NLPALSPTMESGSIVSWEKK 334
N P+LSPT ES + +W +K
Sbjct: 558 NTPSLSPTSESAMLQNWRQK 577
>SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 305 SGSIVSWEKKEGDKLSEGDLLCEIETDK 388
+G ++ K GD ++EGD++ +IE K
Sbjct: 526 TGKVIKVNYKAGDNVAEGDIMVQIEPVK 553
>SB_22536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +2
Query: 185 EHAQNQTVLSTPQW---TVXMRYYSSLPSHIKVNLPALSPTMESGSIV 319
EHA T+ ST W TV M +S++ + ++ A++ T E G+ V
Sbjct: 417 EHAHAHTLFSTVLWTGSTVVMPTHSAVIQLVHTHVTAIAVTPEMGAAV 464
>SB_17434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 182 LEHAQNQTVLSTPQWTVXMRYYSSLPSHIKVNLPALSPTMESGSIVSWEKKE 337
LE Q QT+L P W+ +Y L S + V P L P +S + +++++
Sbjct: 110 LESDQAQTILIVPNWST-QPWYPKL-SRLLVQKPILLPEKKSNIYLPFDQEK 159
>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1565
Score = 27.1 bits (57), Expect = 7.1
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +3
Query: 18 AHLDGIVXXKNIDN-----VANNCVTESNLKRWS*ESYTVRTLRGA 140
A + GI K DN V + V+ + +RWS SYTVRT+ G+
Sbjct: 1228 ARISGIDLTKWKDNGRPPGVPDPTVSPPSSRRWSEWSYTVRTVTGS 1273
>SB_52201| Best HMM Match : DUF1557 (HMM E-Value=7.1)
Length = 303
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 44 QKYR*CCEQLCYGIKS*AMVLRKLYGXNITRCISTELAKRKXTNKLLE 187
++Y C L YG K ++++LYG T I +L +K +++
Sbjct: 71 KRYNDNCTALLYGQKDTTTIVQQLYGQKDTTTIVQQLYGKKDKTTIVQ 118
>SB_56564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 75 HNCSQHYRYFXLXLFRPDERNGFL 4
HN +HY Y+ + RPD++N ++
Sbjct: 30 HNYQRHYPYYQDEVDRPDKKNVYV 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,885,823
Number of Sequences: 59808
Number of extensions: 233063
Number of successful extensions: 639
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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