Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32247
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77659-4|CAB01163.1|  507|Caenorhabditis elegans Hypothetical pr...   119   1e-27
AF047653-6|AAC04462.2|  463|Caenorhabditis elegans Hypothetical ...    47   5e-06
Z37093-3|CAA85465.1|  448|Caenorhabditis elegans Hypothetical pr...    36   0.013
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z70267-5|CAA94209.2|  143|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z77659-4|CAB01163.1|  507|Caenorhabditis elegans Hypothetical
           protein F23B12.5 protein.
          Length = 507

 Score =  119 bits (286), Expect = 1e-27
 Identities = 57/71 (80%), Positives = 63/71 (88%), Gaps = 2/71 (2%)
 Frame = +2

Query: 236 MRYYSS--LPSHIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFET 409
           +R YSS  LP H +V LPALSPTME G++VSW+KKEGD+LSEGDLLCEIETDKATMGFET
Sbjct: 66  VRLYSSGNLPKHNRVALPALSPTMELGTVVSWQKKEGDQLSEGDLLCEIETDKATMGFET 125

Query: 410 PEXGYLAKILI 442
           PE GYLAKILI
Sbjct: 126 PEEGYLAKILI 136


>AF047653-6|AAC04462.2|  463|Caenorhabditis elegans Hypothetical
           protein W02F12.5 protein.
          Length = 463

 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 29/106 (27%), Positives = 55/106 (51%)
 Frame = +2

Query: 125 NITRCISTELAKRKXTNKLLEHAQNQTVLSTPQWTVXMRYYSSLPSHIKVNLPALSPTME 304
           ++T   S + + +  T+ L    QN  + S+  + +     S +   I V  PA + ++ 
Sbjct: 20  SVTAASSAQPSLQAKTSLLEPLVQNVRITSSANFHMSAVRMSDV---ITVEGPAFAESIS 76

Query: 305 SGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEXGYLAKILI 442
            G I  W K++GD ++E +L+ EIETDK ++    P+ G + + L+
Sbjct: 77  EGDI-RWLKQKGDHVNEDELVAEIETDKTSVEVPAPQAGTIVEFLV 121


>Z37093-3|CAA85465.1|  448|Caenorhabditis elegans Hypothetical
           protein ZK669.4 protein.
          Length = 448

 Score = 35.9 bits (79), Expect = 0.013
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 314 IVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEXGYLAKI 436
           +  W  KEGD +S+ D +CE+++DKA +       G + K+
Sbjct: 47  VKEWYVKEGDTISQFDKVCEVQSDKAAVTISCRYDGIVKKL 87


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
           protein W09B6.1a protein.
          Length = 2054

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 305 SGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPE-XGYLAKIL 439
           +G ++ W+K++GD L+ GD+    E+ K     E  +  G L +++
Sbjct: 694 TGKLLQWKKEDGDWLNVGDVYATAESMKMVFQVEVAKAPGRLQRVV 739


>AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical
           protein W09B6.1b protein.
          Length = 813

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 305 SGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFE 406
           +G ++ W+K++GD L+ GD+    E+ K     E
Sbjct: 694 TGKLLQWKKEDGDWLNVGDVYATAESMKMVFQVE 727


>Z70267-5|CAA94209.2|  143|Caenorhabditis elegans Hypothetical
           protein K04C1.4 protein.
          Length = 143

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 397 HSCFVSFNLAQKIAFTKFVPFLFFPANN 314
           H C   F+   +I+F  F+P L    NN
Sbjct: 47  HQCLAKFDKTARISFENFLPVLSHVRNN 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,634,391
Number of Sequences: 27780
Number of extensions: 179577
Number of successful extensions: 410
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)