Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32247
         (446 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   2.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   4.6  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   6.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.1  

>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 242 YYSSLPSHIKVNLPALSPTMES 307
           + + LP H+  N+P +  T+ S
Sbjct: 6   HVAQLPHHLSPNMPTMDSTVSS 27


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 90  DLIP*HNCSQHYRYF 46
           DL+P H C+++ R F
Sbjct: 249 DLVPKHACAEYRRNF 263


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 95  AMVLRKLYGXNITRCISTELAKRKXTNKLL 184
           A  +R +YG ++T   + +LAK K  +  L
Sbjct: 200 AETVRIIYGGSVTAGNAKDLAKEKDIDGFL 229


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 284 ALSPTMESGSIVSWEKKEGDKLSEGDLL 367
           A S   E GSI++  +     LS G+LL
Sbjct: 891 ATSVKAEPGSIMAMSESSKKVLSPGELL 918


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,045
Number of Sequences: 438
Number of extensions: 2313
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)