Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32246
         (365 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor...   168   3e-41
UniRef50_UPI0000EBCA66 Cluster: PREDICTED: hypothetical protein;...    31   8.6  

>UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor;
           n=1; Bombyx mori|Rep: Larval cuticle protein LCP-30
           precursor - Bombyx mori (Silk moth)
          Length = 239

 Score =  168 bits (408), Expect = 3e-41
 Identities = 82/114 (71%), Positives = 82/114 (71%)
 Frame = +1

Query: 22  MRVFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPRRDNSGR 201
           MRVFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDP RDNSGR
Sbjct: 1   MRVFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGR 60

Query: 202 YIPDNCGAYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDLRKYLGDAYKGS 363
           YIPDN GAYN                             KEDL KYLGDAYKGS
Sbjct: 61  YIPDNSGAYNGDRGDRGAAGGFYTGSGTAGGPGGAYVGTKEDLSKYLGDAYKGS 114


>UniRef50_UPI0000EBCA66 Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 255

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -2

Query: 181 WGHXGLDQLHSG-LAYRRMEKQ*SKLGCTGKECTFQFRRPAPLSETGR 41
           WG   +D    G +A+RR  K+ S  GC G E    FR      E GR
Sbjct: 150 WGRINIDSAPGGRVAWRRPPKRLSANGCHGNEAPSVFRWAEGGREAGR 197


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,245,328
Number of Sequences: 1657284
Number of extensions: 4020462
Number of successful extensions: 11387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11379
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13220924981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)