Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32246
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0518 + 18486315-18486462,18486495-18486712,18486763-184868...    29   0.85 
03_05_1143 + 30709825-30709926,30710105-30710260,30710356-307104...    27   4.5  

>10_08_0518 +
           18486315-18486462,18486495-18486712,18486763-18486808,
           18487436-18487709,18487797-18488052
          Length = 313

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +1

Query: 34  LAICLSLTVALAAETGKYTPFQYNRVYS---TVSPFVYK-PGRYVADPGRYDPRR 186
           LAI  +L V   +    Y+  Q  ++YS   TV   V + PGR  AD G+YD RR
Sbjct: 112 LAILDALAVPKVSSFESYSCMQTVKLYSLIVTVEELVLQQPGRAEADFGKYDIRR 166


>03_05_1143 +
           30709825-30709926,30710105-30710260,30710356-30710439,
           30710769-30710882,30711019-30711111,30711888-30711977,
           30712157-30712227,30712300-30712374,30712481-30712568,
           30712748-30712806,30712893-30712956,30713030-30713095,
           30713283-30713435,30713522-30713626,30713739-30713974,
           30714104-30714173,30714286-30714339,30714501-30714557,
           30714662-30714741,30716056-30717919
          Length = 1226

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 129 WRNSRVNSVVLERSVLS---SFGGQRHCQRQADCQKDT 25
           W+++ V  V+  R + S   S  GQ+ C RQ  CQ  T
Sbjct: 28  WKDNNVQVVIRVRPLSSGEISVQGQKRCVRQDSCQSIT 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,572,535
Number of Sequences: 37544
Number of extensions: 114151
Number of successful extensions: 309
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)