Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32246
         (365 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                31   0.38 
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)                 29   1.5  
SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)                    27   4.7  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    26   8.1  

>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 30.7 bits (66), Expect = 0.38
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 100 YNRVYSTVSPFVYKPGR---YVADPGRYDPRRDNSGRYIP 210
           YNR+ +   P++ +PGR   Y   PGR DP     GR  P
Sbjct: 670 YNRLQARDDPYIKQPGRDDPYNKQPGRDDPYIKQPGRDDP 709


>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
          Length = 420

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 28  VFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKP 144
           VFL   +S+TV + +  GKY P  YN   + ++ F + P
Sbjct: 132 VFLVWGISITVGVLSVVGKYEPLAYN--VTVIALFFFLP 168


>SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)
          Length = 438

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 132 EWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTH 22
           E+R+ R NS V    +L+   G+R C+R     + T+
Sbjct: 231 EFRHRRRNSGVGTSEILTDCSGERSCKRSVTSNRSTN 267


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 88  TPFQYNRVYSTVSPFVYKPGRYVADPGRYDPRRDNS--GRYIPDNCG 222
           +P ++NR++ T  P   K    + D    +PR+D     RY+ D  G
Sbjct: 569 SPNKHNRLFMTAGPLEEKLPEDIDDGCEINPRQDFKIRARYLADTYG 615


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,574,524
Number of Sequences: 59808
Number of extensions: 128740
Number of successful extensions: 341
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)