BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV32246 (365 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 31 0.38 SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30) 29 1.5 SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06) 27 4.7 SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 26 8.1 >SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1) Length = 1021 Score = 30.7 bits (66), Expect = 0.38 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = +1 Query: 100 YNRVYSTVSPFVYKPGR---YVADPGRYDPRRDNSGRYIP 210 YNR+ + P++ +PGR Y PGR DP GR P Sbjct: 670 YNRLQARDDPYIKQPGRDDPYNKQPGRDDPYIKQPGRDDP 709 >SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30) Length = 420 Score = 28.7 bits (61), Expect = 1.5 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +1 Query: 28 VFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKP 144 VFL +S+TV + + GKY P YN + ++ F + P Sbjct: 132 VFLVWGISITVGVLSVVGKYEPLAYN--VTVIALFFFLP 168 >SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06) Length = 438 Score = 27.1 bits (57), Expect = 4.7 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = -3 Query: 132 EWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTH 22 E+R+ R NS V +L+ G+R C+R + T+ Sbjct: 231 EFRHRRRNSGVGTSEILTDCSGERSCKRSVTSNRSTN 267 >SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) Length = 833 Score = 26.2 bits (55), Expect = 8.1 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = +1 Query: 88 TPFQYNRVYSTVSPFVYKPGRYVADPGRYDPRRDNS--GRYIPDNCG 222 +P ++NR++ T P K + D +PR+D RY+ D G Sbjct: 569 SPNKHNRLFMTAGPLEEKLPEDIDDGCEINPRQDFKIRARYLADTYG 615 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,574,524 Number of Sequences: 59808 Number of extensions: 128740 Number of successful extensions: 341 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 317 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 340 length of database: 16,821,457 effective HSP length: 74 effective length of database: 12,395,665 effective search space used: 582596255 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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