Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32246
         (365 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    28   2.4  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    28   2.4  
U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine rece...    28   2.4  
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    27   3.1  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    27   3.1  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    27   3.1  
Z75955-2|CAB00112.1|  355|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AF067616-5|AAU05574.1|  497|Caenorhabditis elegans Hypothetical ...    26   7.2  

>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 150 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTH 22
           +AW  D    + +N +  E + LS+   Q+HC+    CQ+D +
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQY 542


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 150 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTH 22
           +AW  D    + +N +  E + LS+   Q+HC+    CQ+D +
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQY 542


>U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine
           receptor, class xa protein4 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 91  ECTFQFRRPAPLSETGRLPKRHAFTVVMKQ 2
           EC+  F   A   E    PKRH  T++  Q
Sbjct: 155 ECSLNFNARASFHEAACAPKRHQLTLIQNQ 184


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 66  GRRNWKVHSFPVQPSLLY 119
           GR++WK H F ++PS LY
Sbjct: 340 GRKSWKKHYFVLRPSGLY 357


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 66  GRRNWKVHSFPVQPSLLY 119
           GR++WK H F ++PS LY
Sbjct: 357 GRKSWKKHYFVLRPSGLY 374


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 66  GRRNWKVHSFPVQPSLLY 119
           GR++WK H F ++PS LY
Sbjct: 469 GRKSWKKHYFVLRPSGLY 486


>Z75955-2|CAB00112.1|  355|Caenorhabditis elegans Hypothetical
           protein R07B7.3 protein.
          Length = 355

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 91  PFQYNRVYSTVSPFVYKPGRYVAD 162
           P Q N V   V P  Y+P +YV D
Sbjct: 319 PVQRNNVVRQVQPVQYRPVQYVTD 342


>AF067616-5|AAU05574.1|  497|Caenorhabditis elegans Hypothetical
           protein F29C4.7c protein.
          Length = 497

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 64  LAAETGKYTPFQYNRV-YSTVSPFVYKPGRYV-ADPGRYDPRRDNSGRYIPD 213
           L  E  KY PF+   V Y+ +       G+ V  DP      RD  G+YIPD
Sbjct: 54  LTQELKKYAPFEIKVVRYTLMDRLKSVLGKRVQCDPAGI--LRDQEGKYIPD 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,129,391
Number of Sequences: 27780
Number of extensions: 91160
Number of successful extensions: 294
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)