Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32245
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    27   1.4  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   3.1  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    25   3.1  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    25   3.1  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   4.1  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   5.5  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    24   9.5  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    24   9.5  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    24   9.5  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    24   9.5  

>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 246 LSGLRTASQNHHPSSSWTHPSLPSWFPFACTS 151
           LSG+        P+SS TH S PS  P   TS
Sbjct: 241 LSGIIGPQMTKSPASSVTHFSTPSMLPIGGTS 272


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 132 LIPDPITMYTQKETMKEVKDASKNLM 209
           L PDP    +QK T+K+ K A   L+
Sbjct: 771 LAPDPPPFTSQKITLKQTKQADMRLL 796


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 308 PNDSRSHRHYP--SFHSPIALVHCRASVLPLKITTHQVLGRILHFL 177
           PN+S++    P   F SP+ L   RA V+PL++   +   ++LH L
Sbjct: 16  PNESKTGNESPEKKFSSPVLLQ--RAKVIPLRLEYEE--RKLLHLL 57


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 116 HHCVNTAPANGRCHC 72
           H+C  T P  GRC C
Sbjct: 283 HYCPETIPYTGRCAC 297


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +3

Query: 69  ITVTSTVRGCSVNTVMAEKHALIPD-PITMYTQK 167
           + V   + G  +NT    KHA++ D PI +   K
Sbjct: 237 VLVVDVIEGVMINTTRIIKHAILHDMPIVLVLNK 270


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 299 SRSHRHYPSFHSPIALVHCRASVLPL 222
           S+SH H+PS     +  + + S+LPL
Sbjct: 542 SKSHNHHPSSQVEKSTSNSKGSMLPL 567


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 170 NHEGSEGCVQELDG 211
           N +G++ CVQELDG
Sbjct: 100 NVDGADLCVQELDG 113


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 236 RPDNEQVRSANESLGSDGDCDYHWAAIGVACSGNRE 343
           R   EQV++A +   +       WA+I   CSG+ E
Sbjct: 409 RVTREQVQNATKETEAPKKKKSFWASILSCCSGSNE 444


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 105  NTVMAEKHALIPDPITMYTQKETMKEVKDASKNLMGGDFERQYGGPTMNKCDR 263
            +T++ E    +P P   ++ ++T   V   S+ L G DF   Y  PT+ +  +
Sbjct: 964  DTILEEDPPFVPKP---FSPEDT---VYFDSRGLKGFDFSEYYNQPTVTEAQK 1010


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 267 FADRTCSLSGLRTASQNHHPSSSWTHPSL 181
           FA  TC+++     SQ  H  S W H +L
Sbjct: 5   FACTTCTVAFNNAESQKIHWKSDWHHYNL 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,567,288
Number of Sequences: 5004
Number of extensions: 30816
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)