Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32245
(391 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,117... 29 0.99
02_01_0016 + 110796-110979,111252-111768,111847-112213 27 5.3
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212... 27 7.0
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 27 7.0
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 27 7.0
02_02_0535 - 11292509-11294679,11294971-11295040,11295268-112953... 27 7.0
02_02_0529 - 11208973-11211143,11211703-11211772,11211993-112120... 27 7.0
11_04_0414 + 17386806-17387936 26 9.2
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 26 9.2
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 26 9.2
03_02_0449 - 8598025-8598115,8598244-8598332 26 9.2
>10_01_0097 -
1171949-1172047,1172520-1172591,1172791-1172949,
1172998-1173381,1173478-1175253,1175329-1175452,
1176859-1177027,1177131-1177226,1177339-1177527,
1177965-1179303
Length = 1468
Score = 29.5 bits (63), Expect = 0.99
Identities = 18/77 (23%), Positives = 29/77 (37%)
Frame = -3
Query: 341 HDYQNKQRQ*QPNDSRSHRHYPSFHSPIALVHCRASVLPLKITTHQVLGRILHFLHGFLL 162
H+ + + Q P S Y P+ CRA + + + + R H +
Sbjct: 444 HNPEEAELQCVPKSFESAEEYIRVFEPLLFEECRAQLYSSYEESLESVSRDAHVMVRVKT 503
Query: 161 RVHRNRVWYECVLLGHH 111
R R WY+ V+L H
Sbjct: 504 VERRERGWYDVVVLPMH 520
>02_01_0016 + 110796-110979,111252-111768,111847-112213
Length = 355
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 168 ETMKEVKDASKNLMGGDFERQYGGPTMNKCDRRM 269
E+ V++ + N GG R G P MN+C R+
Sbjct: 73 ESPVTVRECNTNWFGGFSVRMEGTPEMNRCTARV 106
>10_08_0553 -
18720436-18720494,18721102-18721106,18721136-18721257,
18721390-18721478,18722136-18722316,18722403-18722654,
18722755-18722993,18723680-18723914,18724072-18724132,
18724632-18724987
Length = 532
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 242 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 132
R +L KIT LG ++H +L+ HRNRV+++
Sbjct: 396 RVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHD 429
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 242 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 132
R +L KIT LG ++H +L+ HRNRV+++
Sbjct: 373 RVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHD 406
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 242 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 132
R +L KIT LG ++H +L+ HRNRV+++
Sbjct: 383 RVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHD 416
>02_02_0535 -
11292509-11294679,11294971-11295040,11295268-11295324,
11298629-11298789,11299123-11299156
Length = 830
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 172 VSFCVYIVIGSGMSACFSAITVLTLHP 92
VS CV + SG+SAC +AI +L P
Sbjct: 663 VSTCVVRLELSGLSACLAAIVCSSLQP 689
>02_02_0529 -
11208973-11211143,11211703-11211772,11211993-11212049,
11212769-11212819,11213112-11213264,11216095-11216255,
11216609-11216642
Length = 898
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 172 VSFCVYIVIGSGMSACFSAITVLTLHP 92
VS CV + SG+SAC +AI +L P
Sbjct: 731 VSTCVVRLELSGLSACLAAIVCSSLQP 757
>11_04_0414 + 17386806-17387936
Length = 376
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -2
Query: 246 LSGLRTASQNHHPSSSWTHPSLPSWFPFAC 157
+ G+ T + HHP+++ PS+ F C
Sbjct: 207 VKGVTTTTDEHHPAAAAAAPSIEQVFDLFC 236
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 114 MAEKHA-LIPDPITMYTQKETMKEVKD 191
+ +KH+ I PI+++T+K T KE+ D
Sbjct: 195 LVKKHSEFISYPISLWTEKTTEKEISD 221
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 114 MAEKHA-LIPDPITMYTQKETMKEVKD 191
+ +KH+ I PI+++T+K T KE+ D
Sbjct: 195 LVKKHSEFISYPISLWTEKTTEKEISD 221
>03_02_0449 - 8598025-8598115,8598244-8598332
Length = 59
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 264 ADRTCSLSGLRTASQNHHPSSSWTHPSL 181
ADR SLS L+ + H S SW+H L
Sbjct: 13 ADRKVSLSALKNTNSQH--SLSWSHHKL 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,629,066
Number of Sequences: 37544
Number of extensions: 219613
Number of successful extensions: 653
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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