BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV32245 (391 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25) 28 3.1 SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0) 27 5.4 SB_22057| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2 SB_16332| Best HMM Match : DIX (HMM E-Value=1.2) 27 7.2 SB_57144| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2 SB_48499| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5 SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5 SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14) 26 9.5 >SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25) Length = 816 Score = 27.9 bits (59), Expect = 3.1 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = -2 Query: 258 RTCSLSGLRTASQNH-HPSSSWTHPSLPS 175 +T LS L T S H HP+ W+ P LPS Sbjct: 319 QTSWLSILATESNKHFHPTDPWSGPYLPS 347 >SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0) Length = 2195 Score = 27.1 bits (57), Expect = 5.4 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 12/114 (10%) Frame = -1 Query: 340 TITRTSNANSSPMIVAVTVTTQAFIRRSHLFIVGPP---------YCLSKSP-PIKFLDA 191 T T + ++ +I+ + +TT + S + I+ P + L K+ IK+ D Sbjct: 1715 TTTIITTIINATIIIIIIITTTVIVDISTIIIIIAPSTRGLIIIFFQLDKAYYSIKYGDR 1774 Query: 190 SFTSFMVSF-CV-YIVIGSGMSACFSAITVLTLHPRTVDVTVIDYDRYSLSGHH 35 S++ CV +IVIG + ACF++ L R +D V+ Y G H Sbjct: 1775 IPRSYIGRLICVLWIVIGVILIACFNSTMTTILTARILDKDVMLYGTKVTHGSH 1828 >SB_22057| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 402 Score = 26.6 bits (56), Expect = 7.2 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +3 Query: 129 ALIPDPITMYTQKETMKEVKDASKNL 206 ++IP P Y Q E +KE++ A K++ Sbjct: 289 SIIPQPREYYNQVEKIKEIEQAGKSV 314 >SB_16332| Best HMM Match : DIX (HMM E-Value=1.2) Length = 163 Score = 26.6 bits (56), Expect = 7.2 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = -1 Query: 352 WISLTITRTSNANSSPMIVAVTVTTQA 272 W+S+ +T T A ++P I+A T+T +A Sbjct: 24 WLSMPMTETRIATAAP-IIATTITLEA 49 >SB_57144| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 53 Score = 26.6 bits (56), Expect = 7.2 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = -1 Query: 352 WISLTITRTSNANSSPMIVAVTVTTQA 272 W+S+ +T T A ++P I+A T+T +A Sbjct: 14 WLSMPMTETRIATAAP-IIATTITLEA 39 >SB_48499| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 88 Score = 26.2 bits (55), Expect = 9.5 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -1 Query: 388 VRSSISLRKRAMWISLTITRTSNANSSPMIVAVTVTTQA 272 + S +S + +WI L+ITR M++ +TV QA Sbjct: 20 LESDVSWPQGGIWILLSITRQLTQVYGDMLLRLTVVLQA 58 >SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1012 Score = 26.2 bits (55), Expect = 9.5 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = -1 Query: 298 VAVTVTTQAFIRRSHLFIVGPPYCLSKSPPIKFLDASFTS-FMVSFCVYIVIGSG 137 +AV V AF + F+V P LS S L+ASF+S ++ F + +G G Sbjct: 406 MAVVVVFAAFAQLVLKFLVTPAKPLSPSSASLSLNASFSSRYLTDFEHELCLGKG 460 >SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14) Length = 1624 Score = 26.2 bits (55), Expect = 9.5 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = +2 Query: 119 REART--HTRPDYDVHAKGNHEGSEGCVQELDGW 214 RE+R H RPD ++ + EGS C EL W Sbjct: 1149 RESRAPNHPRPDLNILGELKPEGSWQCGTELTEW 1182 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,361,945 Number of Sequences: 59808 Number of extensions: 256753 Number of successful extensions: 834 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 751 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 833 length of database: 16,821,457 effective HSP length: 74 effective length of database: 12,395,665 effective search space used: 681761575 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -