Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32245
         (391 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25)             28   3.1  
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)                       27   5.4  
SB_22057| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_16332| Best HMM Match : DIX (HMM E-Value=1.2)                       27   7.2  
SB_57144| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_48499| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)                   26   9.5  

>SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25)
          Length = 816

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 258 RTCSLSGLRTASQNH-HPSSSWTHPSLPS 175
           +T  LS L T S  H HP+  W+ P LPS
Sbjct: 319 QTSWLSILATESNKHFHPTDPWSGPYLPS 347


>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2195

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
 Frame = -1

Query: 340  TITRTSNANSSPMIVAVTVTTQAFIRRSHLFIVGPP---------YCLSKSP-PIKFLDA 191
            T T  +   ++ +I+ + +TT   +  S + I+  P         + L K+   IK+ D 
Sbjct: 1715 TTTIITTIINATIIIIIIITTTVIVDISTIIIIIAPSTRGLIIIFFQLDKAYYSIKYGDR 1774

Query: 190  SFTSFMVSF-CV-YIVIGSGMSACFSAITVLTLHPRTVDVTVIDYDRYSLSGHH 35
               S++    CV +IVIG  + ACF++     L  R +D  V+ Y      G H
Sbjct: 1775 IPRSYIGRLICVLWIVIGVILIACFNSTMTTILTARILDKDVMLYGTKVTHGSH 1828


>SB_22057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 129 ALIPDPITMYTQKETMKEVKDASKNL 206
           ++IP P   Y Q E +KE++ A K++
Sbjct: 289 SIIPQPREYYNQVEKIKEIEQAGKSV 314


>SB_16332| Best HMM Match : DIX (HMM E-Value=1.2)
          Length = 163

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 352 WISLTITRTSNANSSPMIVAVTVTTQA 272
           W+S+ +T T  A ++P I+A T+T +A
Sbjct: 24  WLSMPMTETRIATAAP-IIATTITLEA 49


>SB_57144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 352 WISLTITRTSNANSSPMIVAVTVTTQA 272
           W+S+ +T T  A ++P I+A T+T +A
Sbjct: 14  WLSMPMTETRIATAAP-IIATTITLEA 39


>SB_48499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 388 VRSSISLRKRAMWISLTITRTSNANSSPMIVAVTVTTQA 272
           + S +S  +  +WI L+ITR        M++ +TV  QA
Sbjct: 20  LESDVSWPQGGIWILLSITRQLTQVYGDMLLRLTVVLQA 58


>SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 298 VAVTVTTQAFIRRSHLFIVGPPYCLSKSPPIKFLDASFTS-FMVSFCVYIVIGSG 137
           +AV V   AF +    F+V P   LS S     L+ASF+S ++  F   + +G G
Sbjct: 406 MAVVVVFAAFAQLVLKFLVTPAKPLSPSSASLSLNASFSSRYLTDFEHELCLGKG 460


>SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)
          Length = 1624

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 119  REART--HTRPDYDVHAKGNHEGSEGCVQELDGW 214
            RE+R   H RPD ++  +   EGS  C  EL  W
Sbjct: 1149 RESRAPNHPRPDLNILGELKPEGSWQCGTELTEW 1182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,361,945
Number of Sequences: 59808
Number of extensions: 256753
Number of successful extensions: 834
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)