BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV32245 (391 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 24 0.71 AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 24 0.71 AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 1.2 AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 22 2.2 AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 21 6.6 AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 20 8.7 AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 20 8.7 >AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter transporter-1B protein. Length = 593 Score = 23.8 bits (49), Expect = 0.71 Identities = 8/27 (29%), Positives = 18/27 (66%) Frame = +3 Query: 126 HALIPDPITMYTQKETMKEVKDASKNL 206 HAL+ DP+ + ++ T+ ++ D +N+ Sbjct: 177 HALLKDPVKEFWERRTL-QISDGIENI 202 >AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter transporter-1B protein. Length = 646 Score = 23.8 bits (49), Expect = 0.71 Identities = 8/27 (29%), Positives = 18/27 (66%) Frame = +3 Query: 126 HALIPDPITMYTQKETMKEVKDASKNL 206 HAL+ DP+ + ++ T+ ++ D +N+ Sbjct: 230 HALLKDPVKEFWERRTL-QISDGIENI 255 >AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein protein. Length = 1124 Score = 23.0 bits (47), Expect = 1.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -1 Query: 337 ITRTSNANSSPMIVAVTVTTQA 272 ++RTS A P VA TVT+ + Sbjct: 720 VSRTSTAGQFPTNVATTVTSMS 741 Score = 20.6 bits (41), Expect = 6.6 Identities = 7/11 (63%), Positives = 8/11 (72%) Frame = +3 Query: 240 PTMNKCDRRMK 272 PTMNKC R + Sbjct: 876 PTMNKCSDRKR 886 >AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. Length = 652 Score = 22.2 bits (45), Expect = 2.2 Identities = 7/16 (43%), Positives = 10/16 (62%) Frame = -2 Query: 228 ASQNHHPSSSWTHPSL 181 +S +HH S SWT + Sbjct: 401 SSSHHHGSKSWTQEDM 416 >AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate receptor 1 protein. Length = 953 Score = 20.6 bits (41), Expect = 6.6 Identities = 8/24 (33%), Positives = 12/24 (50%) Frame = -2 Query: 267 FADRTCSLSGLRTASQNHHPSSSW 196 F+D+ +S LRT H + W Sbjct: 135 FSDKNIHVSFLRTVPPYSHQTDVW 158 >AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule AbsCAM-Ig7B protein. Length = 1923 Score = 20.2 bits (40), Expect = 8.7 Identities = 8/15 (53%), Positives = 10/15 (66%) Frame = -3 Query: 239 ASVLPLKITTHQVLG 195 +SV LK+ TH V G Sbjct: 1565 SSVYQLKVETHNVAG 1579 >AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member AbsCAM-Ig7A protein. Length = 1919 Score = 20.2 bits (40), Expect = 8.7 Identities = 8/15 (53%), Positives = 10/15 (66%) Frame = -3 Query: 239 ASVLPLKITTHQVLG 195 +SV LK+ TH V G Sbjct: 1561 SSVYQLKVETHNVAG 1575 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 106,234 Number of Sequences: 438 Number of extensions: 2023 Number of successful extensions: 8 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8 length of database: 146,343 effective HSP length: 52 effective length of database: 123,567 effective search space used: 9514659 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.2 bits)
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