BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV32245 (391 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidored... 29 1.1 At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote... 28 2.6 At1g09570.1 68414.m01073 phytochrome A (PHYA) identical to SP|P1... 28 2.6 At4g11530.1 68417.m01850 protein kinase family protein contains ... 27 4.5 At5g02350.1 68418.m00158 DC1 domain-containing protein contains ... 27 5.9 At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 27 5.9 At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 27 5.9 At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 27 5.9 At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 27 5.9 At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 27 5.9 At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger) fa... 27 5.9 At5g30495.2 68418.m03660 expressed protein 26 7.8 At5g30495.1 68418.m03659 expressed protein 26 7.8 At5g01030.2 68418.m00006 expressed protein 26 7.8 At5g01030.1 68418.m00005 expressed protein 26 7.8 At3g04560.1 68416.m00484 expressed protein 26 7.8 >At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidoreductase family protein similar to mandelonitrile lyase from Prunus serotina [SP|P52706, SP|P52707]; contains Pfam profile PF00732 GMC oxidoreductase Length = 572 Score = 29.1 bits (62), Expect = 1.1 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = -1 Query: 253 LFIVGPPYCLSKSPPIKFLDASFTSFMVSFCVYIVIGSGMSACFSAITV 107 LF+ P K+P F+ + S S+ YI+IG G + C A T+ Sbjct: 16 LFLHSPICSSDKAPNYSFMRDATGSPTTSYYDYIIIGGGTAGCPLAATL 64 >At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein kinase, putative Length = 946 Score = 27.9 bits (59), Expect = 2.6 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Frame = -3 Query: 179 LHGFLLRVHRNRVWYECVLLGHHCVNTAPANGRCHC-Y*LRSIQFIRSSS 33 L G+ V N + G+HC N CHC Y L + +RS S Sbjct: 405 LSGYCNAVQPNSTFSTLTKCGNHCGKGKEPNQGCHCVYPLTGVFTLRSPS 454 >At1g09570.1 68414.m01073 phytochrome A (PHYA) identical to SP|P14712 Phytochrome A {Arabidopsis thaliana} Length = 1122 Score = 27.9 bits (59), Expect = 2.6 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -3 Query: 275 SFHSPIALVHCRASVLPLKITTHQVLGRIL 186 S +PI LVHCR S P H+V G I+ Sbjct: 151 SLLNPI-LVHCRTSAKPFYAIIHRVTGSII 179 >At4g11530.1 68417.m01850 protein kinase family protein contains Pfam PF00069: Protein kinase domain Length = 931 Score = 27.1 bits (57), Expect = 4.5 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = -1 Query: 256 HLFIVGPPYCLSKSPPIKFLDASFTSFMVSFCVYIVIGSGMSACFS 119 ++ + PP LS +PP + D FT+F++ F + + + CFS Sbjct: 247 NITLPSPPPPLSLTPPHEAKDFVFTNFLI-FLISLDSVTAQEICFS 291 >At5g02350.1 68418.m00158 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 651 Score = 26.6 bits (56), Expect = 5.9 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = -3 Query: 197 GRILHFLHGFLLRVHRNRVWYECVL 123 G ILHF HG L++ +RV+ E ++ Sbjct: 368 GIILHFSHGHHLKLENSRVYDENII 392 >At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein similar to chitinase, class V GI:505267 from [Nicotiana tabacum] Length = 365 Score = 26.6 bits (56), Expect = 5.9 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%) Frame = -1 Query: 280 TQAFIRRSHLFIVGP---PYCLSKSPPIKFLDASFTSFMVSFCVYIVIGS 140 T + ++ S+ F G P CLS+ P F+D+ T F FC + + S Sbjct: 10 TNSIVKASYWFPDGKSQSPECLSQGTPSSFIDS--TLFTHLFCAFADVDS 57 >At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicases Length = 505 Score = 26.6 bits (56), Expect = 5.9 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -3 Query: 242 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 132 R +L KIT LG ++H +L+ HRNRV+++ Sbjct: 380 RVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHD 413 >At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicases Length = 505 Score = 26.6 bits (56), Expect = 5.9 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -3 Query: 242 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 132 R +L KIT LG ++H +L+ HRNRV+++ Sbjct: 380 RVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHD 413 >At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12) identical to cDNA DEAD box RNA helicase, RH12 GI:3776000 Length = 498 Score = 26.6 bits (56), Expect = 5.9 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -3 Query: 242 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 132 R +L KIT LG ++H +++ HRNRV++E Sbjct: 373 RVELLAKKITE---LGYSCFYIHAKMVQDHRNRVFHE 406 >At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12) identical to cDNA DEAD box RNA helicase, RH12 GI:3776000 Length = 498 Score = 26.6 bits (56), Expect = 5.9 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -3 Query: 242 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 132 R +L KIT LG ++H +++ HRNRV++E Sbjct: 373 RVELLAKKITE---LGYSCFYIHAKMVQDHRNRVFHE 406 >At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger) family protein contains Pfam PF00097: Zinc finger, C3HC4 type (RING finger) Length = 466 Score = 26.6 bits (56), Expect = 5.9 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = +2 Query: 68 NNSDIDRSRVQC*HSDGREARTHTRPD-YD 154 NN +IDRSR+ H++ A TH D YD Sbjct: 376 NNREIDRSRMPLNHAETITASTHVCNDCYD 405 >At5g30495.2 68418.m03660 expressed protein Length = 196 Score = 26.2 bits (55), Expect = 7.8 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = +3 Query: 132 LIPDPITMYTQKETMKEVKDASKNLMGGDFERQYGGPTMNKCDRR 266 L+ DP +K +KE+++ S+ + ++++ G T NK RR Sbjct: 152 LVSDPKVSQYRKRKVKEIEEKSRAVTNKKWKKK-GNQTTNKKQRR 195 >At5g30495.1 68418.m03659 expressed protein Length = 196 Score = 26.2 bits (55), Expect = 7.8 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = +3 Query: 132 LIPDPITMYTQKETMKEVKDASKNLMGGDFERQYGGPTMNKCDRR 266 L+ DP +K +KE+++ S+ + ++++ G T NK RR Sbjct: 152 LVSDPKVSQYRKRKVKEIEEKSRAVTNKKWKKK-GNQTTNKKQRR 195 >At5g01030.2 68418.m00006 expressed protein Length = 744 Score = 26.2 bits (55), Expect = 7.8 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +2 Query: 119 REARTHTRPDYDVHAKGNHEGSEGCVQELDG 211 R+ T R ++HAK E ++ CV++LDG Sbjct: 206 RDKETQKRAG-EIHAKEARERAKECVEKLDG 235 >At5g01030.1 68418.m00005 expressed protein Length = 744 Score = 26.2 bits (55), Expect = 7.8 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +2 Query: 119 REARTHTRPDYDVHAKGNHEGSEGCVQELDG 211 R+ T R ++HAK E ++ CV++LDG Sbjct: 206 RDKETQKRAG-EIHAKEARERAKECVEKLDG 235 >At3g04560.1 68416.m00484 expressed protein Length = 417 Score = 26.2 bits (55), Expect = 7.8 Identities = 9/23 (39%), Positives = 14/23 (60%) Frame = +1 Query: 1 LRLSYHTSISSDDDLINCIDRSQ 69 +R YH S+ D+ C+D+SQ Sbjct: 164 VRADYHALFSAAQDVAECLDKSQ 186 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,370,604 Number of Sequences: 28952 Number of extensions: 169780 Number of successful extensions: 515 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 503 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 515 length of database: 12,070,560 effective HSP length: 73 effective length of database: 9,957,064 effective search space used: 557595584 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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