Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32245
(391 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidored... 29 1.1
At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote... 28 2.6
At1g09570.1 68414.m01073 phytochrome A (PHYA) identical to SP|P1... 28 2.6
At4g11530.1 68417.m01850 protein kinase family protein contains ... 27 4.5
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ... 27 5.9
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 27 5.9
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 27 5.9
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 27 5.9
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 27 5.9
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 27 5.9
At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger) fa... 27 5.9
At5g30495.2 68418.m03660 expressed protein 26 7.8
At5g30495.1 68418.m03659 expressed protein 26 7.8
At5g01030.2 68418.m00006 expressed protein 26 7.8
At5g01030.1 68418.m00005 expressed protein 26 7.8
At3g04560.1 68416.m00484 expressed protein 26 7.8
>At1g12570.1 68414.m01459 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 572
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 253 LFIVGPPYCLSKSPPIKFLDASFTSFMVSFCVYIVIGSGMSACFSAITV 107
LF+ P K+P F+ + S S+ YI+IG G + C A T+
Sbjct: 16 LFLHSPICSSDKAPNYSFMRDATGSPTTSYYDYIIIGGGTAGCPLAATL 64
>At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein
kinase, putative
Length = 946
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -3
Query: 179 LHGFLLRVHRNRVWYECVLLGHHCVNTAPANGRCHC-Y*LRSIQFIRSSS 33
L G+ V N + G+HC N CHC Y L + +RS S
Sbjct: 405 LSGYCNAVQPNSTFSTLTKCGNHCGKGKEPNQGCHCVYPLTGVFTLRSPS 454
>At1g09570.1 68414.m01073 phytochrome A (PHYA) identical to
SP|P14712 Phytochrome A {Arabidopsis thaliana}
Length = 1122
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 275 SFHSPIALVHCRASVLPLKITTHQVLGRIL 186
S +PI LVHCR S P H+V G I+
Sbjct: 151 SLLNPI-LVHCRTSAKPFYAIIHRVTGSII 179
>At4g11530.1 68417.m01850 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 931
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 256 HLFIVGPPYCLSKSPPIKFLDASFTSFMVSFCVYIVIGSGMSACFS 119
++ + PP LS +PP + D FT+F++ F + + + CFS
Sbjct: 247 NITLPSPPPPLSLTPPHEAKDFVFTNFLI-FLISLDSVTAQEICFS 291
>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 197 GRILHFLHGFLLRVHRNRVWYECVL 123
G ILHF HG L++ +RV+ E ++
Sbjct: 368 GIILHFSHGHHLKLENSRVYDENII 392
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -1
Query: 280 TQAFIRRSHLFIVGP---PYCLSKSPPIKFLDASFTSFMVSFCVYIVIGS 140
T + ++ S+ F G P CLS+ P F+D+ T F FC + + S
Sbjct: 10 TNSIVKASYWFPDGKSQSPECLSQGTPSSFIDS--TLFTHLFCAFADVDS 57
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 242 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 132
R +L KIT LG ++H +L+ HRNRV+++
Sbjct: 380 RVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHD 413
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 242 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 132
R +L KIT LG ++H +L+ HRNRV+++
Sbjct: 380 RVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHD 413
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 242 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 132
R +L KIT LG ++H +++ HRNRV++E
Sbjct: 373 RVELLAKKITE---LGYSCFYIHAKMVQDHRNRVFHE 406
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 242 RASVLPLKITTHQVLGRILHFLHGFLLRVHRNRVWYE 132
R +L KIT LG ++H +++ HRNRV++E
Sbjct: 373 RVELLAKKITE---LGYSCFYIHAKMVQDHRNRVFHE 406
>At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 466
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 68 NNSDIDRSRVQC*HSDGREARTHTRPD-YD 154
NN +IDRSR+ H++ A TH D YD
Sbjct: 376 NNREIDRSRMPLNHAETITASTHVCNDCYD 405
>At5g30495.2 68418.m03660 expressed protein
Length = 196
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 132 LIPDPITMYTQKETMKEVKDASKNLMGGDFERQYGGPTMNKCDRR 266
L+ DP +K +KE+++ S+ + ++++ G T NK RR
Sbjct: 152 LVSDPKVSQYRKRKVKEIEEKSRAVTNKKWKKK-GNQTTNKKQRR 195
>At5g30495.1 68418.m03659 expressed protein
Length = 196
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 132 LIPDPITMYTQKETMKEVKDASKNLMGGDFERQYGGPTMNKCDRR 266
L+ DP +K +KE+++ S+ + ++++ G T NK RR
Sbjct: 152 LVSDPKVSQYRKRKVKEIEEKSRAVTNKKWKKK-GNQTTNKKQRR 195
>At5g01030.2 68418.m00006 expressed protein
Length = 744
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 119 REARTHTRPDYDVHAKGNHEGSEGCVQELDG 211
R+ T R ++HAK E ++ CV++LDG
Sbjct: 206 RDKETQKRAG-EIHAKEARERAKECVEKLDG 235
>At5g01030.1 68418.m00005 expressed protein
Length = 744
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 119 REARTHTRPDYDVHAKGNHEGSEGCVQELDG 211
R+ T R ++HAK E ++ CV++LDG
Sbjct: 206 RDKETQKRAG-EIHAKEARERAKECVEKLDG 235
>At3g04560.1 68416.m00484 expressed protein
Length = 417
Score = 26.2 bits (55), Expect = 7.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 1 LRLSYHTSISSDDDLINCIDRSQ 69
+R YH S+ D+ C+D+SQ
Sbjct: 164 VRADYHALFSAAQDVAECLDKSQ 186
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,370,604
Number of Sequences: 28952
Number of extensions: 169780
Number of successful extensions: 515
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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