Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32242
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)               33   0.18 
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)                    28   4.0  
SB_49328| Best HMM Match : DUF1091 (HMM E-Value=1.6)                   28   4.0  
SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4)                      28   4.0  
SB_35277| Best HMM Match : WIF (HMM E-Value=9.8e-06)                   28   5.3  
SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  

>SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)
          Length = 322

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 300 NIYTLGI*CFYERLFCNVXDIYLYYLLPWSMYRECERVRRMH 425
           N YT+ I C+Y  + C V  +YL++ L   + +ECE     H
Sbjct: 158 NTYTILILCYYPAILCIVKPVYLFFGL--GVDKECESCYSFH 197


>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
          Length = 1136

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 384 TVINNINKYXQRYKIAFRKNIRSLKCI 304
           T++ + N+Y Q Y+  F     SLKCI
Sbjct: 179 TMVTSENEYVQEYRARFEIKTNSLKCI 205


>SB_49328| Best HMM Match : DUF1091 (HMM E-Value=1.6)
          Length = 555

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 139 WRPKISKRSTTKHKNGLYRFFVENVTFYTLAVDDERKTVK 258
           + P   K  T KH  GL+   + ++T     + DER+ V+
Sbjct: 174 YEPAAMKAFTQKHSPGLFEMLLSSITREDSRLSDERQAVQ 213


>SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4)
          Length = 263

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 384 TVINNINKYXQRYKIAFRKNIRSLKCI 304
           T++ + N+Y Q Y+  F     SLKCI
Sbjct: 179 TMVTSENEYVQEYRARFEIKTNSLKCI 205


>SB_35277| Best HMM Match : WIF (HMM E-Value=9.8e-06)
          Length = 587

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 373 IYYRGVCIESASECVGCTCAREHRRDTPPTFVPXTRTCTPRTLH 504
           ++YR + + S+ +C+G T  RE   DTP T+     + TPR ++
Sbjct: 161 VFYR-MRVPSSVDCLGFTWFRE---DTPTTYSILIESLTPRLVY 200


>SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 148 KISKRS-TTKHKNGLYRFFVENVTFYTLAVDDER-KTVK 258
           KIS +S T KHK  L R   ++  FYT   D  + KT+K
Sbjct: 34  KISTKSKTAKHKKDLSRLQKKDPEFYTFLQDKSKSKTIK 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,823,938
Number of Sequences: 59808
Number of extensions: 262281
Number of successful extensions: 690
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)