Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32242
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.3  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   10.0 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   10.0 

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 268 IFSILQFFAHHQQ 230
           IFS++ F AH QQ
Sbjct: 333 IFSVVGFMAHEQQ 345


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 268 IFSILQFFAHHQQ 230
           IFS++ F AH QQ
Sbjct: 386 IFSVVGFMAHEQQ 398


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 442 GARARTCIRRTRSHSRY 392
           G+R+R+  R +  HSRY
Sbjct: 218 GSRSRSFQRTSSCHSRY 234


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 87  SRPALADGFGTFPPRFDLAPED 152
           S+P  A+ F  FPP    A  D
Sbjct: 407 SKPMCAEAFQEFPPLGRFAVRD 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,173
Number of Sequences: 438
Number of extensions: 2839
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)