Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32237
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0580 - 25184019-25184024,25184096-25184851,25184870-251849...    29   2.9  
04_04_1397 - 33230416-33230742,33230852-33231007,33231130-332315...    28   3.9  
05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365           28   5.1  
03_02_0080 + 5498638-5498699,5499121-5499190,5499551-5500711,550...    28   5.1  
04_03_0734 + 19134129-19134464,19135864-19136789,19137148-191376...    27   8.9  

>11_06_0580 -
           25184019-25184024,25184096-25184851,25184870-25184927,
           25185306-25185376
          Length = 296

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = -2

Query: 452 CLLASMLLNPYVFFKS----LMILMIWSSYLSKDSYPVLMVGML 333
           CL+   LL   VF K     ++ +++W +YLS DS  V ++G L
Sbjct: 40  CLVVVFLLFAAVFRKRCRSRVLSVLLWLAYLSADSVAVFVLGRL 83


>04_04_1397 -
           33230416-33230742,33230852-33231007,33231130-33231543,
           33234177-33234307,33235076-33235202,33235709-33236209,
           33237624-33237935,33238690-33238719
          Length = 665

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 211 CVYSLDCQSN-VTRAVPRYPCKSLHWIQLSQLIG 113
           CV+   CQ +   R++PR P   L W+Q++   G
Sbjct: 562 CVHQRYCQDDGELRSLPRCPHSHLSWVQITGFFG 595


>05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365
          Length = 144

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
 Frame = -2

Query: 383 SSYLSKDSYPVL----MVGMLL*RSLSSKCTWA 297
           SS+  ++++P++    +VG LL R +++ CTWA
Sbjct: 78  SSFPDEETFPIVICETLVGYLLYRMINAGCTWA 110


>03_02_0080 +
           5498638-5498699,5499121-5499190,5499551-5500711,
           5500940-5501029,5501147-5501464
          Length = 566

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +1

Query: 106 DIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITD 219
           D I+ + TT+++    +D+   LVSH IDS+ SK  TD
Sbjct: 138 DSIIVLGTTKAHLPWSEDL--KLVSHCIDSIASKASTD 173


>04_03_0734 +
           19134129-19134464,19135864-19136789,19137148-19137615,
           19138096-19138159,19138885-19139022
          Length = 643

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -2

Query: 344 VGMLL*RSLSSKCTWAFFSLRSVSYKIGYGYLEVCPTRNTLT---SVMCLLFRLSIKCDT 174
           VG L     ++   WA   + +    +GYG+L +  TR       S+MCLL  +    +T
Sbjct: 66  VGFLAGTLSATLPAWAMLLVGAAQNFLGYGWLWLIVTRQLPALPLSMMCLLIFVGTNGET 125

Query: 173 SGTTISL 153
              T SL
Sbjct: 126 YFNTASL 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.135    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,693,881
Number of Sequences: 37544
Number of extensions: 268912
Number of successful extensions: 555
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)