BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV32237 (516 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_06_0580 - 25184019-25184024,25184096-25184851,25184870-251849... 29 2.9 04_04_1397 - 33230416-33230742,33230852-33231007,33231130-332315... 28 3.9 05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365 28 5.1 03_02_0080 + 5498638-5498699,5499121-5499190,5499551-5500711,550... 28 5.1 04_03_0734 + 19134129-19134464,19135864-19136789,19137148-191376... 27 8.9 >11_06_0580 - 25184019-25184024,25184096-25184851,25184870-25184927, 25185306-25185376 Length = 296 Score = 28.7 bits (61), Expect = 2.9 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%) Frame = -2 Query: 452 CLLASMLLNPYVFFKS----LMILMIWSSYLSKDSYPVLMVGML 333 CL+ LL VF K ++ +++W +YLS DS V ++G L Sbjct: 40 CLVVVFLLFAAVFRKRCRSRVLSVLLWLAYLSADSVAVFVLGRL 83 >04_04_1397 - 33230416-33230742,33230852-33231007,33231130-33231543, 33234177-33234307,33235076-33235202,33235709-33236209, 33237624-33237935,33238690-33238719 Length = 665 Score = 28.3 bits (60), Expect = 3.9 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = -3 Query: 211 CVYSLDCQSN-VTRAVPRYPCKSLHWIQLSQLIG 113 CV+ CQ + R++PR P L W+Q++ G Sbjct: 562 CVHQRYCQDDGELRSLPRCPHSHLSWVQITGFFG 595 >05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365 Length = 144 Score = 27.9 bits (59), Expect = 5.1 Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 4/33 (12%) Frame = -2 Query: 383 SSYLSKDSYPVL----MVGMLL*RSLSSKCTWA 297 SS+ ++++P++ +VG LL R +++ CTWA Sbjct: 78 SSFPDEETFPIVICETLVGYLLYRMINAGCTWA 110 >03_02_0080 + 5498638-5498699,5499121-5499190,5499551-5500711, 5500940-5501029,5501147-5501464 Length = 566 Score = 27.9 bits (59), Expect = 5.1 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = +1 Query: 106 DIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITD 219 D I+ + TT+++ +D+ LVSH IDS+ SK TD Sbjct: 138 DSIIVLGTTKAHLPWSEDL--KLVSHCIDSIASKASTD 173 >04_03_0734 + 19134129-19134464,19135864-19136789,19137148-19137615, 19138096-19138159,19138885-19139022 Length = 643 Score = 27.1 bits (57), Expect = 8.9 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Frame = -2 Query: 344 VGMLL*RSLSSKCTWAFFSLRSVSYKIGYGYLEVCPTRNTLT---SVMCLLFRLSIKCDT 174 VG L ++ WA + + +GYG+L + TR S+MCLL + +T Sbjct: 66 VGFLAGTLSATLPAWAMLLVGAAQNFLGYGWLWLIVTRQLPALPLSMMCLLIFVGTNGET 125 Query: 173 SGTTISL 153 T SL Sbjct: 126 YFNTASL 132 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.317 0.135 0.383 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,693,881 Number of Sequences: 37544 Number of extensions: 268912 Number of successful extensions: 555 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 551 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 555 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1118831240 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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