Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32237
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_24194| Best HMM Match : RyR (HMM E-Value=5) 31 0.43
SB_23245| Best HMM Match : ApoC-I (HMM E-Value=5.7) 31 0.56
SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_45172| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08) 28 5.3
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0) 27 6.9
SB_42206| Best HMM Match : Clat_adaptor_s (HMM E-Value=3.5) 27 9.2
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035) 27 9.2
SB_765| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_48195| Best HMM Match : DUF229 (HMM E-Value=0) 27 9.2
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39) 27 9.2
>SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 271 YDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYED 384
YD + K VH+DD E Y N+ Y+ +D Y+D
Sbjct: 636 YDDNEGSKMVKVHWDDYENYVNVNVNDDDYDDYDDYDD 673
>SB_24194| Best HMM Match : RyR (HMM E-Value=5)
Length = 211
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +1
Query: 286 KLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNIEASK 450
++KN+ +F+++ R NNI + + D + + +K +GF N+E +
Sbjct: 97 RVKNSLEYFENQSRRNNIQVSGIEESEGETWYDAEVKVKEAIKTKFGFENVEIER 151
>SB_23245| Best HMM Match : ApoC-I (HMM E-Value=5.7)
Length = 206
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +1
Query: 286 KLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNIE 441
++KN+ +F+++ R NNI + + D + + +K +GF N+E
Sbjct: 97 RVKNSLEYFENQSRRNNIQVSGIEESEGETWYDAEVKVKEAIKTKFGFENVE 148
>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -2
Query: 467 RSNNDCLLASMLLNPYVFFKSLMILMIWSSYLSKDSYPVLMV 342
RSNN L+ L P + ++ M W LSKD PVL+V
Sbjct: 820 RSNNAKLVVISLPVPVAEMTTPLMYMSWLEMLSKDLPPVLLV 861
>SB_45172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 534
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 16 FRTYASSVLMQISRGTSEYSYEFKVPNKQADIILSVETTES 138
FR A V+ I+ S+ S K+P+ + + L++ET E+
Sbjct: 8 FRDEAQGVIKDIAFSVSQISVSEKLPSSRESVFLNIETKEN 48
>SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 85 KVPNKQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITDVKVFLVGHT 246
+V D++ ET +N + + P +H + L KH D K +GHT
Sbjct: 2 EVEKSPTDVVQEFETLAANEVKKERRIAPGEAHFVWKLIQKHGEDYKAERLGHT 55
>SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1214
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = -2
Query: 239 PTRNTLTSVMCLLFRLSI 186
PTRNT+ S++C+L+ +SI
Sbjct: 912 PTRNTIISIICILWGISI 929
>SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)
Length = 961
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 339 PHHQD-WV*ILRQIRGPNHQYHQRLEKYIWIQQHRSQQ 449
P +D WV +++Q H+ Q++ K++ + Q RSQQ
Sbjct: 698 PESKDGWVYVVQQRTARQHELPQQMGKWVPLTQTRSQQ 735
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 121 VETTESNAKTYKDIVVPLVSHLIDSLKSKHITDVKVFLVGHTSKYPYPILYD-TDLKL-K 294
+E ++D + L SH + H+ + FL T+++P P++Y DL L +
Sbjct: 200 IEANNITTVIFQDSMPDLFSHFQHNNVEAHMYASQWFLTMFTARFPLPMVYSIMDLILCE 259
Query: 295 NAHVHF 312
HV F
Sbjct: 260 GTHVIF 265
>SB_51569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +1
Query: 97 KQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITDVKVFLVGHTSKYPYPILYD 276
K DI +++E ++ KT K P V + D + I K +G S+ PY
Sbjct: 83 KAIDIAITMEQSQIQLKTMKG-EDPSVFKMHDWKEELEINGKKAAFIGQCSQMPYDTYKS 141
Query: 277 TDLK 288
D+K
Sbjct: 142 LDMK 145
>SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
Length = 298
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 211 ITDVKVFLVGHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIK 351
I DVK L G P P+ + + + HFD +E++ + PTIK
Sbjct: 57 IEDVKR-LCGAKKGPPLPLRKKLLISMDDVPDHFDSREQWPHCPTIK 102
>SB_42206| Best HMM Match : Clat_adaptor_s (HMM E-Value=3.5)
Length = 167
Score = 27.1 bits (57), Expect = 9.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Frame = +1
Query: 322 ERYNNIPTIKTGYESFDKYEDQIISIINDLKNT------------YGFNNIEASKQSLFD 465
ERY T++ ESFD++ +++ I K T +G NN + ++ L +
Sbjct: 94 ERYLYFCTVQEPSESFDRFVNRLRDHIATCKYTTLENEMLRDRIVFGVNNSDTRERLLRE 153
Query: 466 LXVRPGAIKHL 498
+RP + KHL
Sbjct: 154 KKIRPRSNKHL 164
>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
Length = 2440
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 64 SEYSYEFKVPNKQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSK 207
SE SY F+V + D+I +++T + T + ++ L S L L K
Sbjct: 1790 SEQSYAFEVSFDEPDVITNMKTKVKSKDTVRKDLLDLSSDLSADLPQK 1837
>SB_765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Frame = -2
Query: 170 GTTISL*VFALD---SVVSTDRI-ISACLLGTLNS*LYSDVPRLICI 42
G+T+S+ V LD SV+++ I ++ L+G L S Y+D+ +LICI
Sbjct: 45 GSTVSV-VVGLDRFTSVITSAAIAVAYTLVGGLYSVAYTDILQLICI 90
>SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)
Length = 1743
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 345 GGDVIVAFLVVEVYVGVFQFEVSVIQDRIWIFGGMSYKEHFDV 217
GGD ++ L + +V + VI DR WI +++FDV
Sbjct: 547 GGDAMIMMLTIMGFV--VGNDADVIDDRRWIMMACDGEDNFDV 587
>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
Length = 2865
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 16 FRTYASSVLMQISRGTSEYSYEFKVPNKQADIILSVETTESNAKTYKDIVVPL 174
FR Y Q+SR + + P++ I S + T N+ Y+D V+ +
Sbjct: 2397 FRNYLMQNRQQVSRIIERHITPLEKPSEPPSISSSSDVTNVNSAFYRDAVLSM 2449
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.135 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,523,283
Number of Sequences: 59808
Number of extensions: 342348
Number of successful extensions: 1211
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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