BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV32237 (516 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g24610.1 68416.m03091 kelch repeat-containing F-box family pr... 31 0.61 At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 29 2.5 At3g26160.1 68416.m03263 cytochrome P450 family protein similar ... 28 4.3 At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 28 4.3 At1g27270.1 68414.m03322 paired amphipathic helix repeat-contain... 28 4.3 At1g03080.1 68414.m00282 kinase interacting family protein simil... 28 4.3 At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy cha... 27 5.7 >At3g24610.1 68416.m03091 kelch repeat-containing F-box family protein contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain Length = 445 Score = 30.7 bits (66), Expect = 0.61 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -1 Query: 285 EVSVIQDRIWIFGGMSYKEHFDVSNVF 205 EVSV+ +I ++GG YK ++D VF Sbjct: 201 EVSVVDGKINVWGGCKYKHYYDWGEVF 227 >At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat family protein contains 4 WD-40 repeats (PF00400); similar to block of proliferation protein Bop1 (GI:1679772) [Mus musculus] Length = 753 Score = 28.7 bits (61), Expect = 2.5 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = +1 Query: 199 KSKHITDV---KVFLVGHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTGYESF 369 KSKH+T + K+ L GH Y + Y + K ++ +++R IPT T S Sbjct: 304 KSKHLTYIPPPKLKLPGHDESYNPSLEYIPTEEEKASYELMFEEDRPKFIPTRFTSLRSI 363 Query: 370 DKYEDQI 390 YE+ + Sbjct: 364 PAYENAL 370 >At3g26160.1 68416.m03263 cytochrome P450 family protein similar to cytochrome P450 GB:O65784 [Arabidopsis thaliana] Length = 502 Score = 27.9 bits (59), Expect = 4.3 Identities = 16/69 (23%), Positives = 33/69 (47%) Frame = +1 Query: 28 ASSVLMQISRGTSEYSYEFKVPNKQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSK 207 A+S+L +++ G S + EF +K +++ ET + + + + L+D + + Sbjct: 177 AASILFRVAFGQSFHESEFTDTDKIDELVFETETAQGSFTCSDFFPIAGLGWLVDWISGQ 236 Query: 208 HITDVKVFL 234 H VFL Sbjct: 237 HKRLNDVFL 245 >At3g19130.1 68416.m02429 RNA-binding protein, putative similar to RNA Binding Protein 47 [Nicotiana plumbaginifolia] GI:9663769, DNA binding protein ACBF GB:AAC49850 from [Nicotiana tabacum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 435 Score = 27.9 bits (59), Expect = 4.3 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +3 Query: 378 RGPNHQYHQRLEKYIWIQQHRSQQ 449 +GP Q+H +L +Y QQH+ QQ Sbjct: 72 QGPYQQHHPQLHQYGSYQQHQHQQ 95 >At1g27270.1 68414.m03322 paired amphipathic helix repeat-containing protein contains Pfam profile PF02671: Paired amphipathic helix repeat Length = 241 Score = 27.9 bits (59), Expect = 4.3 Identities = 15/58 (25%), Positives = 27/58 (46%) Frame = +1 Query: 286 KLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNIEASKQSL 459 K K+ +F+D Y + + +KY++ + I+ N +GF + AS Q L Sbjct: 4 KSKSPEFNFEDGMAYFDAVKVALQDTEPEKYQEFVRIFIDYTANRFGFETLSASLQEL 61 >At1g03080.1 68414.m00282 kinase interacting family protein similar to kinase interacting protein 1 (GI:13936326) [Petunia integrifolia] Length = 1744 Score = 27.9 bits (59), Expect = 4.3 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = +1 Query: 280 DLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDL--KNTYGFNNIEASKQ 453 DLK+K D+K + N TIK ++ ++++SI L K GF + SK Sbjct: 1589 DLKIKVETEEKDEKGKENEYETIKGQINEAEEALEKLLSINRKLVTKVQNGFERSDGSKS 1648 Query: 454 SL 459 S+ Sbjct: 1649 SM 1650 >At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy chain-related low similarity to Inter-alpha-inhibitor H4 heavy chain [Rattus norvegicus] GI:2292988; contains Pfam profile PF00092: von Willebrand factor type A domain Length = 758 Score = 27.5 bits (58), Expect = 5.7 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = +1 Query: 52 SRGTSEYSYEFKVPNKQADIILSVETTESNAKTYKD 159 SR + Y FK+P+ I SV T S YKD Sbjct: 166 SRFFKSHIYTFKIPHVAGGSIFSVNVTWSQKLIYKD 201 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.317 0.135 0.383 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,282,718 Number of Sequences: 28952 Number of extensions: 229326 Number of successful extensions: 608 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 602 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 608 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 937669760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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