Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32237
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24610.1 68416.m03091 kelch repeat-containing F-box family pr...    31   0.61 
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea...    29   2.5  
At3g26160.1 68416.m03263 cytochrome P450 family protein similar ...    28   4.3  
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t...    28   4.3  
At1g27270.1 68414.m03322 paired amphipathic helix repeat-contain...    28   4.3  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    28   4.3  
At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy cha...    27   5.7  

>At3g24610.1 68416.m03091 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 445

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 285 EVSVIQDRIWIFGGMSYKEHFDVSNVF 205
           EVSV+  +I ++GG  YK ++D   VF
Sbjct: 201 EVSVVDGKINVWGGCKYKHYYDWGEVF 227


>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to block of proliferation protein Bop1
           (GI:1679772) [Mus musculus]
          Length = 753

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +1

Query: 199 KSKHITDV---KVFLVGHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTGYESF 369
           KSKH+T +   K+ L GH   Y   + Y    + K ++    +++R   IPT  T   S 
Sbjct: 304 KSKHLTYIPPPKLKLPGHDESYNPSLEYIPTEEEKASYELMFEEDRPKFIPTRFTSLRSI 363

Query: 370 DKYEDQI 390
             YE+ +
Sbjct: 364 PAYENAL 370


>At3g26160.1 68416.m03263 cytochrome P450 family protein similar to
           cytochrome P450 GB:O65784 [Arabidopsis thaliana]
          Length = 502

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/69 (23%), Positives = 33/69 (47%)
 Frame = +1

Query: 28  ASSVLMQISRGTSEYSYEFKVPNKQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSK 207
           A+S+L +++ G S +  EF   +K  +++   ET + +        +  +  L+D +  +
Sbjct: 177 AASILFRVAFGQSFHESEFTDTDKIDELVFETETAQGSFTCSDFFPIAGLGWLVDWISGQ 236

Query: 208 HITDVKVFL 234
           H     VFL
Sbjct: 237 HKRLNDVFL 245


>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
           RNA Binding Protein 47 [Nicotiana plumbaginifolia]
           GI:9663769, DNA binding protein ACBF GB:AAC49850 from
           [Nicotiana tabacum]; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 435

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 378 RGPNHQYHQRLEKYIWIQQHRSQQ 449
           +GP  Q+H +L +Y   QQH+ QQ
Sbjct: 72  QGPYQQHHPQLHQYGSYQQHQHQQ 95


>At1g27270.1 68414.m03322 paired amphipathic helix repeat-containing
           protein contains Pfam profile PF02671: Paired
           amphipathic helix repeat
          Length = 241

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +1

Query: 286 KLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNIEASKQSL 459
           K K+   +F+D   Y +   +       +KY++ +   I+   N +GF  + AS Q L
Sbjct: 4   KSKSPEFNFEDGMAYFDAVKVALQDTEPEKYQEFVRIFIDYTANRFGFETLSASLQEL 61


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 280  DLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQIISIINDL--KNTYGFNNIEASKQ 453
            DLK+K      D+K + N   TIK      ++  ++++SI   L  K   GF   + SK 
Sbjct: 1589 DLKIKVETEEKDEKGKENEYETIKGQINEAEEALEKLLSINRKLVTKVQNGFERSDGSKS 1648

Query: 454  SL 459
            S+
Sbjct: 1649 SM 1650


>At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy
           chain-related low similarity to Inter-alpha-inhibitor H4
           heavy chain [Rattus norvegicus] GI:2292988; contains
           Pfam profile PF00092: von Willebrand factor type A
           domain
          Length = 758

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 52  SRGTSEYSYEFKVPNKQADIILSVETTESNAKTYKD 159
           SR    + Y FK+P+     I SV  T S    YKD
Sbjct: 166 SRFFKSHIYTFKIPHVAGGSIFSVNVTWSQKLIYKD 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.135    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,282,718
Number of Sequences: 28952
Number of extensions: 229326
Number of successful extensions: 608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)