Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32236
         (348 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008...    32   0.11 
11_06_0086 + 19914234-19914382,19914590-19914653,19914793-199148...    26   9.3  

>07_03_1486 +
           26899479-26899549,26899861-26899989,26900649-26900834,
           26901025-26901247,26901662-26901666,26901796-26901924,
           26902697-26902894,26903138-26903356,26903461-26903699,
           26903797-26903888,26904009-26904224,26904327-26904554,
           26904631-26904722,26904806-26904899,26905475-26905567,
           26905667-26906640,26906727-26906841,26907135-26908895
          Length = 1687

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 72  EVLCACRISNFASILNVA*ETIYLFICLLSXEFFYLFKEELVIMFS 209
           EV  ACR+ NF +   +A +  YL  CL+   F  L ++ L  + S
Sbjct: 673 EVARACRMGNFIAFFRLARKATYLQACLMHAHFAKLRRQALASLHS 718


>11_06_0086 +
           19914234-19914382,19914590-19914653,19914793-19914882,
           19915000-19915056,19915147-19915195,19915393-19915469,
           19915686-19915725,19915813-19915907,19916007-19916171,
           19916317-19916427,19916515-19916602,19916691-19916757,
           19916822-19916939,19917022-19917139,19917398-19917643,
           19917736-19917833,19917961-19918143,19918237-19918356,
           19918515-19918565
          Length = 661

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 292 YTTNYTRVLKLIVRGEIVEKFGNI 221
           Y  NY+R+ K +    ++ K GN+
Sbjct: 347 YAYNYSRITKSVTLSSLISKLGNL 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,664,155
Number of Sequences: 37544
Number of extensions: 80057
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)