BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV32236 (348 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_44135| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7 >SB_44135| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 98 Score = 25.8 bits (54), Expect = 9.7 Identities = 15/56 (26%), Positives = 27/56 (48%) Frame = +3 Query: 90 RISNFASILNVA*ETIYLFICLLSXEFFYLFKEELVIMFSYYI*MLPNFSTISPLT 257 R+S + ++ E I +FI + E +V++ +Y +L F +SPLT Sbjct: 21 RVSQLTLLSRLSQECILMFILEAYERMGIAYGETVVVLGVWYRGILVAFQKLSPLT 76 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,854,925 Number of Sequences: 59808 Number of extensions: 98031 Number of successful extensions: 131 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 131 length of database: 16,821,457 effective HSP length: 73 effective length of database: 12,455,473 effective search space used: 523129866 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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