Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32236
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   1.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   4.2  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              20   7.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   7.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   7.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   7.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          20   9.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   9.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   9.6  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 85  HAGYLILHQSSMWPEKLFIYLFVY 156
           H GYLI   +  +   LF+ +F Y
Sbjct: 203 HLGYLIFSSTISFYLPLFVMVFTY 226


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 11/53 (20%), Positives = 24/53 (45%)
 Frame = +3

Query: 153 LLSXEFFYLFKEELVIMFSYYI*MLPNFSTISPLTISFKTLV*FVVYKL*YIK 311
           LLS   F+L   E++   S  + +L  +   + + +    ++  V+  + Y K
Sbjct: 274 LLSQTMFFLLISEIIPSTSLALPLLGKYLLFTMILVGLSVVITIVILNVHYRK 326


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 145 LFVY*VXNFFIYLKR 189
           LFV  + NF IY KR
Sbjct: 141 LFVPYITNFIIYSKR 155


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 223 CYQIFQQFLPLQLVL 267
           CY I+  F+PL L++
Sbjct: 219 CYGIWVYFVPLFLII 233


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 74  FGDLINGKTXXPP 36
           FGD+  GK   PP
Sbjct: 644 FGDVCRGKLKLPP 656


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 223 CYQIFQQFLPLQLVL 267
           CY I+  F+PL L++
Sbjct: 95  CYGIWVYFVPLFLII 109


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 304 YYSLYTTNYTRVLKLIVRGEIVEKFGN 224
           Y  +    +TR+   I  G +V+ +GN
Sbjct: 322 YVQMIHDLHTRISTAIDLGYVVDSYGN 348


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 153 LLSXEFFYLFKEELVIMFSYYI*MLPNFSTISPLTISFKTLV*FVV 290
           LLS   F+L   E++   S  + +L  F   + +  +F   V  VV
Sbjct: 279 LLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVV 324


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 304 YYSLYTTNYTRVLKLIVRGEIVEKFGN 224
           Y  +    +TR+   I  G +V+ +GN
Sbjct: 322 YVQMIHDLHTRISTAIDLGYVVDSYGN 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,072
Number of Sequences: 438
Number of extensions: 1072
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)