Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32232
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 52 7e-08
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 41 1e-04
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 36 0.004
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.2
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 26 3.8
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 3.8
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 25 5.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 5.1
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 5.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.7
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 25 6.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 6.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 8.9
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 51.6 bits (118), Expect = 7e-08
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +2
Query: 20 CGDPITDRVIQALGVSWHA-HHFVXXXXXXXXXXXXFMEQAGRPYCSDCYADKFATRCKG 196
C PI D+ + +H HHF + + +C CY +K+A +CK
Sbjct: 321 CKTPIEDQAVHINNDWFHENHHFCAGCSEVFNVNIPCIYRDDLYWCQTCYDNKYAVKCKK 380
Query: 197 CGNPIVDKAIIALDAKWHRDCFTCMA 274
C PI+ ++ D ++H C+TC A
Sbjct: 381 CRKPILGISVKGSDGEYHSQCWTCGA 406
Score = 41.5 bits (93), Expect = 7e-05
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +2
Query: 20 CGDPI-TDRVIQALGVSWHAHHFVXXXXXXXXXXXXFMEQAGRPYCSDCYADKFATRCKG 196
CG + R+I A G H F F + G+ YC Y ++F+ RCK
Sbjct: 261 CGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYCHLDYHEQFSPRCKH 320
Query: 197 CGNPIVDKAIIALDAKWHRDCFTC 268
C PI D+A+ + +H + C
Sbjct: 321 CKTPIEDQAVHINNDWFHENHHFC 344
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Frame = +2
Query: 20 CGDPITDRVIQALGVSWHAHHFVXXXXXXXXXXXX-FMEQAGRPYCSDCYADKFATRCKG 196
CG + I AL +H HF + E G+ YC Y+ FA RC G
Sbjct: 183 CGMALRGYYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHYHYSTLFAARCCG 242
Query: 197 CGNPIVDKAI----IALDAKWHRDC 259
C PI+ + + + WH C
Sbjct: 243 CDGPILRQFVEVYRNGVSQNWHVPC 267
Score = 32.3 bits (70), Expect = 0.044
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Frame = +2
Query: 20 CGDPITDRVIQALGVSWHAHHFVXXXXXXXXXXXXFMEQAGR-----PYCSDCYADKFAT 184
CG I+ + ++ALG +H F F P C Y +
Sbjct: 119 CGQVISGQYVRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQVPLCETDYFRRLDL 178
Query: 185 RCKGCGNPIVDKAIIALDAKWHRDCFTC 268
C CG + I AL+ K+H + FTC
Sbjct: 179 LCASCGMALRGYYITALNKKFHIEHFTC 206
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 188 CKGCGNPIVDKAIIALDAKWHRDCFTC 268
C CG I + + AL +H +CF C
Sbjct: 116 CASCGQVISGQYVRALGNIYHLECFRC 142
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 35.9 bits (79), Expect = 0.004
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +2
Query: 140 GRPYCSDCYADKFATRCKGCGNPIVDKAIIALDAKWHRDCFTCMADRSNI 289
GRP CS C A C C I D A+++ +HR+CF C R I
Sbjct: 67 GRPVCSSC-----AHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQI 111
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 167 ADKFATRCKGCGNPIVDKAI-IALDAK-WHRDCFTC 268
+ K +T C CG + I+ WH+DCF C
Sbjct: 12 SSKGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCC 47
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 7/30 (23%)
Frame = +1
Query: 40 PCDPSS----W---RVVARSPLRLRWMQEG 108
P DPS W R+VA S +RLRW+++G
Sbjct: 1272 PIDPSEKLGFWDKIRLVAHSQIRLRWLEDG 1301
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +3
Query: 75 LTTSSAVDARRSLAVEGSWNRLAVPIAPTATQTSSPLAARGAEIQSSIKPSSRLMLSGTA 254
+T+SS +++ + N + TA TS+P+ + S+ SS ++ S TA
Sbjct: 3396 ITSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSTVVNSSTPITSSSVLNSSTA 3455
Query: 255 IAS 263
IAS
Sbjct: 3456 IAS 3458
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 304 SLNDPNVASIRHAREAIAVPLSIKRDDGFIDDWISAPLAASGELVCV 164
+LN PN +++P KRD+ FI+ +S+ L L+ V
Sbjct: 183 ALNRPNTLITDANNSLVSIPSRKKRDEAFIESVMSSLLKGGTVLLPV 229
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 39 TV*SKLLACRGTLTTSSAVDARRSLAVEGSWNRL 140
T+ +K CRG + S VDA A+ G N L
Sbjct: 646 TIIAKCPMCRGNIVQDSLVDATILQAIHGPLNSL 679
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 5 RGAMXCGDPI-TDRVIQALGVSWHA 76
RGA G+ I D VIQ + VSW A
Sbjct: 133 RGARWTGEDIQADEVIQDINVSWDA 157
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 78 TTSSAVDARRSLAVEGSWNRLAVPIAPTATQTSS 179
TTS++ S+ G + L+ PI PT TS+
Sbjct: 167 TTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTST 200
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 139 SLFHEPSTAKLLLASTADEVVSVPRHAKSLDHTVS 35
S FH+PS+ L AD SVP ++S + S
Sbjct: 32 SYFHKPSSTGLFATLVADTNSSVPSASRSPESIAS 66
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 6.7
Identities = 20/88 (22%), Positives = 39/88 (44%)
Frame = +3
Query: 33 SLTV*SKLLACRGTLTTSSAVDARRSLAVEGSWNRLAVPIAPTATQTSSPLAARGAEIQS 212
S T+ S + +TSS + + S + S + ++ +++ +SSP ++ S
Sbjct: 287 SSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSS 346
Query: 213 SIKPSSRLMLSGTAIASRAWRIEATFGS 296
S PSS S T+ + + +T S
Sbjct: 347 SSSPSSSSFSSTTSSSKSSSSFSSTVSS 374
Score = 24.6 bits (51), Expect = 8.9
Identities = 20/85 (23%), Positives = 40/85 (47%)
Frame = +3
Query: 78 TTSSAVDARRSLAVEGSWNRLAVPIAPTATQTSSPLAARGAEIQSSIKPSSRLMLSGTAI 257
+TSS++ + S + S + + I+ +++ +SSP + + I SS SS + + I
Sbjct: 249 STSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSP-TSTSSTISSSSSSSSSPTSTSSTI 307
Query: 258 ASRAWRIEATFGSLREKVQESSDRF 332
+S + + +L SS F
Sbjct: 308 SSSSSSSSSFSSTLSSSSMSSSSSF 332
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 471 HLNSYNLCHINSKSVTIHLDG 409
HL + CH N K + H DG
Sbjct: 69 HLKIHKRCHTNVKPFSCHYDG 89
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 6.7
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Frame = +3
Query: 33 SLTV*SKLLACRGTLTTSSAVDARRSLAVEGSWNRLAVPIAPTATQTSSPL---AARGAE 203
S ++ S LA ++S A + S ++ S PT++ TSS L AA +
Sbjct: 131 SSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSA 190
Query: 204 IQSSIKPSS-RLMLSGTAIASRAWRIEATFGSLREKVQESS 323
SS+ SS S TA +S A+ + + SS
Sbjct: 191 TSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSS 231
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 90 AVDARRSLAVEGSWNRLAVPIAPTATQTSSPLAARGAEIQSSI 218
++DA+ + EGS A+P+ P + +S L RG + S I
Sbjct: 82 SIDAKLGSS-EGSTASSALPLTPRSPSNASWLLVRGGLLDSPI 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,283
Number of Sequences: 5004
Number of extensions: 39680
Number of successful extensions: 135
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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