Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32232
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 35 0.034
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 33 0.18
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 32 0.31
09_04_0445 - 17677126-17677512,17677608-17678564 29 1.7
07_03_1482 - 26864793-26865043,26865325-26865454,26865564-268657... 29 2.2
02_03_0360 + 18104948-18106159 29 2.2
02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122... 28 5.1
09_04_0211 - 15656614-15657186 27 6.8
05_05_0270 - 23728986-23729267,23729575-23730120,23730207-237305... 27 6.8
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 27 6.8
02_01_0420 + 3076493-3076646,3076721-3077704,3078013-3078824 27 6.8
05_05_0114 - 22488172-22488279,22488414-22488511,22488616-224887... 27 8.9
05_01_0361 - 2824728-2826043,2826288-2826507,2827616-2827702,282... 27 8.9
01_01_0334 - 2698347-2699020,2699321-2699477,2699576-2699647,269... 27 8.9
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 35.1 bits (77), Expect = 0.034
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 164 YADKFATRCKGCGNPIVDKAIIA-LDAKWHRDCFTCMA 274
+A + C GC NPI ++ +D+ WH CF C A
Sbjct: 249 FASSGSRTCAGCKNPIGHGRFLSCMDSVWHPQCFRCFA 286
Score = 32.3 bits (70), Expect = 0.24
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Frame = +2
Query: 2 ARGAMXCGDPITD-RVIQALGVSWHAHHFVXXXXXXXXXXXXFMEQAGRPYCSDCYADKF 178
+R C +PI R + + WH F F +PY CY D F
Sbjct: 254 SRTCAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSCYKDFF 313
Query: 179 ATRCKGCGN 205
+C C N
Sbjct: 314 HPKCDVCKN 322
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 32.7 bits (71), Expect = 0.18
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = +2
Query: 188 CKGCGNPIVDKAIIA-LDAKWHRDCFTCMA-DR--SNIRIVERKSAGIQ*PIRHSP*W 349
C GC PI ++ +D+ WH CF C A DR S I K I+ R P W
Sbjct: 178 CAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISEYEIPTNKDGHIE--YRAHPFW 233
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 31.9 bits (69), Expect = 0.31
Identities = 13/53 (24%), Positives = 18/53 (33%)
Frame = +2
Query: 41 RVIQALGVSWHAHHFVXXXXXXXXXXXXFMEQAGRPYCSDCYADKFATRCKGC 199
R + +G WH F F PY CY ++F +C C
Sbjct: 569 RFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERFHPKCDVC 621
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 164 YADKFATRCKGCGNPIVDKAIIA-LDAKWHRDCFTCMADRSNIRIVERKSAG 316
++ F T C GC + I ++ + A WH +CF C A I E +G
Sbjct: 551 FSSGFRT-CAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSG 601
>09_04_0445 - 17677126-17677512,17677608-17678564
Length = 447
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -1
Query: 366 AEWLVFHHGECRIG--HWIPALFLST 295
A W +FHHGE R+G W+ +L +T
Sbjct: 180 ARWALFHHGEVRLGMSPWLTSLAEAT 205
>07_03_1482 -
26864793-26865043,26865325-26865454,26865564-26865771,
26867529-26867599,26867875-26867884,26869562-26870310
Length = 472
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Frame = -3
Query: 217 IDDWISAPLAASGELVCVAVG---AIGTASLFHEPSTAKLLLASTADEVVSVPR------ 65
I W S +A + C + A+G SL H P+ ++ + + VPR
Sbjct: 235 IKRWKSQRVADQSDFRCSKIAVTVAVGIRSLLHNPTRGNMITGNVLRATIEVPRAGEVNF 294
Query: 64 HAKSLDH 44
H LDH
Sbjct: 295 HCTHLDH 301
>02_03_0360 + 18104948-18106159
Length = 403
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -3
Query: 205 ISAPLAASGELVCVAVGAIGTASLFHEPSTAKLLLASTADEVVSVPRHAKSL 50
+ + LAAS ELV G G PSTA LL++ E+ HA+ L
Sbjct: 8 VCSSLAASKELVKALAGIWGPGDGALNPSTASSLLSALRAELDLARAHARRL 59
>02_01_0178 -
1223725-1223736,1223900-1224025,1224404-1224649,
1224731-1224922,1225059-1225138,1225233-1226826
Length = 749
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +3
Query: 102 RRSLAVEGSWNRLAVPIAPTATQTSSPLAARG-----AEIQSSIKPSSRLMLSGTAIASR 266
RRSL + + L +P+ P + SPL A + +S+ S RL+L G +SR
Sbjct: 64 RRSLRLSSAHVALLLPLLPLHPRLVSPLLATSPHLLPPSLPASLPVSPRLLLLGALASSR 123
Query: 267 A 269
+
Sbjct: 124 S 124
>09_04_0211 - 15656614-15657186
Length = 190
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 206 DFRTPCSEWRTCLRSSRSNRDG 141
+ R S W CLRS RS+R+G
Sbjct: 67 ELRGHTSSWPRCLRSHRSSREG 88
>05_05_0270 -
23728986-23729267,23729575-23730120,23730207-23730561,
23731147-23731442,23731665-23731714,23731802-23731904,
23732059-23732148,23732328-23732384,23732571-23732618,
23732725-23732753,23732940-23733087
Length = 667
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 384 ELSAFTAEWLVFHHGECRIGHWIPALFLS 298
E SAF W++FH I I ALFLS
Sbjct: 93 EKSAFAISWILFHMALFCISTAIKALFLS 121
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 188 CKGCGNPIVDKAIIA-LDAKWHRDCFTCMADRSNIRIVE 301
C GC + I ++ L WH CF C + R IR +E
Sbjct: 114 CGGCKHEIGHGHYLSCLGMYWHPQCFRCSSCRHPIREME 152
>02_01_0420 + 3076493-3076646,3076721-3077704,3078013-3078824
Length = 649
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 273 RIEATFGSLREKVQESSDRFDILRDGKPATLR*MRLIHHKYINKIPHRDV 422
R + G +++ R++I+RD + +HH+Y K+ HRD+
Sbjct: 407 RTDQLHGGHHTTIRQWDTRYNIVRDIATG----LHYVHHEYEPKVLHRDI 452
>05_05_0114 -
22488172-22488279,22488414-22488511,22488616-22488784,
22489310-22489377,22490485-22490521,22490660-22490741,
22490845-22490903
Length = 206
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 453 LCHINSKSVTIHLDGGFYLYICDELSAFTAEWLVFHHGEC 334
LC N KS++ + Y Y C + +FTA +VF G+C
Sbjct: 66 LCSDNLKSLSTMANISQY-YCCLPVPSFTALLMVFFPGDC 104
>05_01_0361 -
2824728-2826043,2826288-2826507,2827616-2827702,
2827726-2827980,2828704-2828733
Length = 635
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +3
Query: 12 PWXAATPSLTV*SKLLACRGTLTTSSAVDARRSLAVEGSWNRLAVPIAPTATQTSSPLAA 191
PW AA+ ++ + + R + SSA A+ ++ + + R P A T T +S A
Sbjct: 566 PWLAASVTIRTTIPVCSARPNVVNSSAGAAQPAVQILSASPRKEEPEARTNTSDTSNAAT 625
Query: 192 RGAEI 206
+E+
Sbjct: 626 ASSEL 630
>01_01_0334 -
2698347-2699020,2699321-2699477,2699576-2699647,
2699697-2700641,2701183-2701259,2701908-2702064
Length = 693
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -3
Query: 232 RDDGFIDDWISAPLAASGELVCVAVGAIGTASLFHEPSTAKLLLASTADEVV 77
R++ D+W S + E C A A F E S +LLL+ +EV+
Sbjct: 543 RNEVLFDEWCSQNITVLQEEDCQHYEAAAAAFDFTEMSADQLLLSDLTNEVL 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,566,383
Number of Sequences: 37544
Number of extensions: 303217
Number of successful extensions: 1038
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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