Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32230
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01120.1 68418.m00016 hypothetical protein contains Pfam prof...    29   1.9  
At4g35760.1 68417.m05076 expressed protein                             27   7.5  
At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family...    27   7.5  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    27   9.9  

>At5g01120.1 68418.m00016 hypothetical protein contains Pfam profile
           PF05056: Protein of unknown function (DUF674)
          Length = 510

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 154 FSRLPISTISRLLNARYLKYRCLSYPCHENPACRLRDKKI-HLKIKHCKQLL 2
           FS LP+ TI RLL   + K R ++  C  N    +    + H   + CKQ+L
Sbjct: 39  FSTLPMGTIVRLLEMHH-KSRSIAIGCFNNIYASVVSMGMKHFSTQACKQML 89


>At4g35760.1 68417.m05076 expressed protein
          Length = 376

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 319 AYLLFN*NK*FSGSLCIYCVVKKY-DFSTIF 408
           AY L+  +   SGS C+YC+V  +  FS  F
Sbjct: 180 AYFLYILSTKLSGSSCLYCLVSAFLSFSLFF 210


>At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family
           protein identical to proline-rich protein 2 [Arabidopsis
           thaliana] gi|7620011|gb|AAF64549
          Length = 321

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 89  PIVSVPRKPCLPTPR 45
           P+V +P+KPC P P+
Sbjct: 283 PVVVIPKKPCPPLPK 297


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 89  PIVSVPRKPCLPTPR 45
           P+V +P+KPC P P+
Sbjct: 404 PVVVIPKKPCPPLPQ 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,472,902
Number of Sequences: 28952
Number of extensions: 166284
Number of successful extensions: 283
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)