Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32228
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    31   0.14 
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    29   0.31 
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    27   1.7  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   3.8  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   5.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.9  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    25   8.9  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -1

Query: 174  IGFVNEVVVFLVNAILSCGFRINEAILHLCYVNFLQHFHIHKHFRVY 34
            I  + + V  +++A++  G   + ++L  C+VN   H   H+  R+Y
Sbjct: 917  IHVIEQTVKTVISALIRLGKDFDSSLLVSCFVNAFPHIPQHRRLRLY 963


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 356 YWLVTTLSVLPMDLVRFPNS 415
           YW++TTLS+ P DLVR  N+
Sbjct: 108 YWMMTTLSLEPGDLVRVINT 127


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 202 EEQXXTYFTEDIGMNAYYYYFHSHLPFWWTSEKYG 306
           EE       +DIGM AY       L F W S+++G
Sbjct: 109 EETTHNKSLQDIGMIAYVGTIVGQLSFGWYSDRFG 143


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
            Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 95   KMASLILKPQLSMAFTRKTTTSFTKPIILTPFYTIMKN 208
            ++A+   +P +   F  K T   TKPI++   + IMK+
Sbjct: 949  RLAASYGQPIIFQKFKEKLTHKGTKPIVVLNIFQIMKS 986


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 265  HSHLPFWWTSEKYGALKERRGEV 333
            HSHLPF +T E +  +K R G V
Sbjct: 1085 HSHLPFKFTPESF--IKIRNGNV 1105


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 22  APYEVYPKMFMNMEVLQKIYVTKMQDGLINPEAAAKYGIHKEN 150
           A  + Y K+   ME +Q      +Q GL+N  + +   +H+ N
Sbjct: 615 AQIQAYNKLQSQMEHVQNSNEQHLQPGLLNKVSKSFDSVHRRN 657


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 256  YYFHSHLPFWWTSEKY 303
            Y    + PFWWTS+++
Sbjct: 1469 YQLLKNNPFWWTSQRH 1484


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 118 AAAKYGIHKENDYFVYKANYSNAVLYNNEEQXXTYFTEDIGMNAYYYYFHSH 273
           A+ KYG H     F +   +SN++++ + ++  T    D+  N Y  YF  H
Sbjct: 65  ASKKYGAHLGR--FTH---HSNSLIHASTKEDNTVRYLDVVTNRYLRYFPGH 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,668
Number of Sequences: 5004
Number of extensions: 37846
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)