Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32228
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and bel...    30   0.85 
AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and bel...    30   0.85 
AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and bel...    30   0.85 
Z67995-2|CAA91944.2|  458|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    27   6.0  
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     27   6.0  
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    27   6.0  

>AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform c protein.
          Length = 660

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 103 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 207
           +++P       IHKE   F YK+N   A+LY   E
Sbjct: 227 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 261


>AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform b protein.
          Length = 644

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 103 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 207
           +++P       IHKE   F YK+N   A+LY   E
Sbjct: 211 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 245


>AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform a protein.
          Length = 641

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 103 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 207
           +++P       IHKE   F YK+N   A+LY   E
Sbjct: 208 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 242


>Z67995-2|CAA91944.2|  458|Caenorhabditis elegans Hypothetical
           protein M153.2 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 138 NAILSCGFRINEAILHLCYVNFLQHFHIHK 49
           +AI+ CG  ++  +  LCY+NF Q   + K
Sbjct: 295 DAIILCGTIVHLVVYALCYINFPQDSSLKK 324


>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 108 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETV 4
           N  I     V  L H HIH++ + +F+  + N TV
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTV 186


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 108 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETV 4
           N  I     V  L H HIH++ + +F+  + N TV
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTV 186


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 108 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETV 4
           N  I     V  L H HIH++ + +F+  + N TV
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTV 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,711,857
Number of Sequences: 27780
Number of extensions: 203710
Number of successful extensions: 494
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)