Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32224
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   4.9  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   6.5  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   6.5  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   6.5  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 216 TDSTNTRRALTWIQAQKHSEKFTFNHRTSGPWASTRK*IICNQ 344
           T S + R     IQ + H+   T +H T G   +T     C Q
Sbjct: 262 TSSPSNRFTRHLIQRRTHTRHTTTSHNTRGTPRTTPASSRCGQ 304


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 71  RSLQPPLWHQHNFLV 115
           R   PP W+QH  L+
Sbjct: 219 RDTAPPQWYQHQPLL 233


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 181 IKI**YIVGMFSGLILNRANYFYEEIVLMPQ 89
           +KI    VG+F  L      Y Y++ +++PQ
Sbjct: 244 MKIASQFVGIFCSLYFCIFGYIYDDEMVVPQ 274


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 181 IKI**YIVGMFSGLILNRANYFYEEIVLMPQ 89
           +KI    VG+F  L      Y Y++ +++PQ
Sbjct: 69  MKIASQFVGIFCSLYFCIFGYIYDDEMVVPQ 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,028
Number of Sequences: 336
Number of extensions: 2607
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)